Results 1 - 20 of 203 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8979 | 3' | -55.9 | NC_002512.2 | + | 229405 | 0.66 | 0.963748 |
Target: 5'- gCACCCGUcgUGagGGCCGGuccuccucccccGGGGGCg -3' miRNA: 3'- -GUGGGCGuaGCagUCGGUC------------UUCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 227936 | 0.67 | 0.930756 |
Target: 5'- aCGCCgGCGgacgaggCGggggAGCgCGGggGAGCCg -3' miRNA: 3'- -GUGGgCGUa------GCag--UCG-GUCuuCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 227602 | 0.73 | 0.634162 |
Target: 5'- cCACCCGCAg---CGGCCGGAGG-GCg -3' miRNA: 3'- -GUGGGCGUagcaGUCGGUCUUCuCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 226699 | 0.73 | 0.673987 |
Target: 5'- uCGCCCGCGgcggCGUCgAGCgaCGGGAG-GCCg -3' miRNA: 3'- -GUGGGCGUa---GCAG-UCG--GUCUUCuCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 226572 | 0.73 | 0.66406 |
Target: 5'- gGCUCGCGcUCccCGGCCAGGAGGGCg -3' miRNA: 3'- gUGGGCGU-AGcaGUCGGUCUUCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 226224 | 0.67 | 0.914688 |
Target: 5'- -cUCCGgAcCGUCGGCCGcGAGgGGGCCg -3' miRNA: 3'- guGGGCgUaGCAGUCGGU-CUU-CUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 226197 | 0.67 | 0.914688 |
Target: 5'- cCGCgCCGUuagCGcgCGGCCGGGccaucaccggGGAGCCg -3' miRNA: 3'- -GUG-GGCGua-GCa-GUCGGUCU----------UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 225721 | 0.69 | 0.862103 |
Target: 5'- uCGCCCGCGagccgcggcgacUCGcUCAGUCGGGGcgcGGCCg -3' miRNA: 3'- -GUGGGCGU------------AGC-AGUCGGUCUUc--UCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 225411 | 0.66 | 0.956807 |
Target: 5'- gCGCCgGgGUCGg-GGUCGGGuuGGGGCCg -3' miRNA: 3'- -GUGGgCgUAGCagUCGGUCU--UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 223820 | 0.66 | 0.959332 |
Target: 5'- cCGCUCGCG-CGUC-GCCAGAuucugacgauuggcAGAgagGCCg -3' miRNA: 3'- -GUGGGCGUaGCAGuCGGUCU--------------UCU---CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 223263 | 0.67 | 0.940334 |
Target: 5'- -gUCCGCGUCGUCGGggGGcGGGAcGCCg -3' miRNA: 3'- guGGGCGUAGCAGUCggUC-UUCU-CGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 222644 | 0.75 | 0.564671 |
Target: 5'- cCGCuCCGCcgCGaCGGCCGGccGGGCCg -3' miRNA: 3'- -GUG-GGCGuaGCaGUCGGUCuuCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 222196 | 0.67 | 0.935659 |
Target: 5'- gGCCgGCGUCGUCcguuucuucGUCGGGguggccgucGGGGCCg -3' miRNA: 3'- gUGGgCGUAGCAGu--------CGGUCU---------UCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 220512 | 0.71 | 0.788189 |
Target: 5'- gGCCUGCGUCGccCGGgacCUGGAGGAGCUg -3' miRNA: 3'- gUGGGCGUAGCa-GUC---GGUCUUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 220423 | 0.67 | 0.935659 |
Target: 5'- cCGCCCGCcuaCGgcCAGCCGccGGAGCUc -3' miRNA: 3'- -GUGGGCGua-GCa-GUCGGUcuUCUCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 219299 | 0.76 | 0.506747 |
Target: 5'- gGCCCGCuucGUCGUCcgcGGCCacgGGGAGAGCg -3' miRNA: 3'- gUGGGCG---UAGCAG---UCGG---UCUUCUCGg -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 218961 | 0.66 | 0.949012 |
Target: 5'- gACCCcucCGUCGcCGGCUGGGAGguccGGCCc -3' miRNA: 3'- gUGGGc--GUAGCaGUCGGUCUUC----UCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 216873 | 0.7 | 0.814305 |
Target: 5'- -gUCCGCGUCGUCGuUCAGGAucGCCa -3' miRNA: 3'- guGGGCGUAGCAGUcGGUCUUcuCGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 214181 | 0.68 | 0.89659 |
Target: 5'- aGCCCGuCAUCGUC-GCggaGGAGGAcCCg -3' miRNA: 3'- gUGGGC-GUAGCAGuCGg--UCUUCUcGG- -5' |
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8979 | 3' | -55.9 | NC_002512.2 | + | 211866 | 0.67 | 0.914688 |
Target: 5'- gACCUcaGCAUCGUCGGCgCccuGGAGCg -3' miRNA: 3'- gUGGG--CGUAGCAGUCG-GucuUCUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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