miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 3' -55.9 NC_002512.2 + 174343 0.66 0.963748
Target:  5'- cCGCCgCGCccUCGUCcGCCGGGaugcGGAugGCCg -3'
miRNA:   3'- -GUGG-GCGu-AGCAGuCGGUCU----UCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 105905 0.66 0.949012
Target:  5'- gGCUCGcCGUCGUCGuacacggaacGCCAGAgccccgAGGGUCc -3'
miRNA:   3'- gUGGGC-GUAGCAGU----------CGGUCU------UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 105622 0.66 0.949012
Target:  5'- gCACCgGcCGUCGUCGGUCuccGAGAcccgGCCg -3'
miRNA:   3'- -GUGGgC-GUAGCAGUCGGuc-UUCU----CGG- -5'
8979 3' -55.9 NC_002512.2 + 197274 1.11 0.00337
Target:  5'- uCACCCGCAUCGUCAGCCAGAAGAGCCu -3'
miRNA:   3'- -GUGGGCGUAGCAGUCGGUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 155671 0.66 0.963748
Target:  5'- -cCCCGCGUCGggaccgCGGCCcacGGAcGucGCCg -3'
miRNA:   3'- guGGGCGUAGCa-----GUCGG---UCUuCu-CGG- -5'
8979 3' -55.9 NC_002512.2 + 4740 0.66 0.963748
Target:  5'- gGCauGCGUCGUCGacGgCGGAAGAGgCg -3'
miRNA:   3'- gUGggCGUAGCAGU--CgGUCUUCUCgG- -5'
8979 3' -55.9 NC_002512.2 + 172784 0.66 0.960383
Target:  5'- -cCCCGCuuccUCGUCccgcucGGUCAGcGGAGCUu -3'
miRNA:   3'- guGGGCGu---AGCAG------UCGGUCuUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 123784 0.66 0.960383
Target:  5'- cCGCCCGggcgaGUCGaagCGGCU-GAAGAGCg -3'
miRNA:   3'- -GUGGGCg----UAGCa--GUCGGuCUUCUCGg -5'
8979 3' -55.9 NC_002512.2 + 125257 0.66 0.960035
Target:  5'- gGCCCGCAcuuucugucCGUCcGCCuGGcgcaccuGGAGCCc -3'
miRNA:   3'- gUGGGCGUa--------GCAGuCGGuCU-------UCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 186421 0.66 0.949012
Target:  5'- -uCCaCGCcgUGcUCGGCCGGcuGGGCCu -3'
miRNA:   3'- guGG-GCGuaGC-AGUCGGUCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 127393 0.66 0.956807
Target:  5'- -uCCCGCggCGggaacgacGCCgAGggGAGCCu -3'
miRNA:   3'- guGGGCGuaGCagu-----CGG-UCuuCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 132021 0.66 0.960035
Target:  5'- gACCucggcggCGaCGUCGUCGGCCAGGgaccggAGGGUg -3'
miRNA:   3'- gUGG-------GC-GUAGCAGUCGGUCU------UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 135833 0.66 0.963748
Target:  5'- cCGCCgCGCccGUCGUC-GCC-GAAGAgauccGCCg -3'
miRNA:   3'- -GUGG-GCG--UAGCAGuCGGuCUUCU-----CGG- -5'
8979 3' -55.9 NC_002512.2 + 191640 0.66 0.953018
Target:  5'- uCGCCCG-AUCGg-AGCCAGGAcGGCg -3'
miRNA:   3'- -GUGGGCgUAGCagUCGGUCUUcUCGg -5'
8979 3' -55.9 NC_002512.2 + 112889 0.66 0.963748
Target:  5'- cCGCCCuGCGUgcggcCGUCGGCCcgcccGGAcGGGGCg -3'
miRNA:   3'- -GUGGG-CGUA-----GCAGUCGG-----UCU-UCUCGg -5'
8979 3' -55.9 NC_002512.2 + 196251 0.66 0.960383
Target:  5'- gCGCCCGCGcgcgccucUCGccUCGGCgAGggGGGa- -3'
miRNA:   3'- -GUGGGCGU--------AGC--AGUCGgUCuuCUCgg -5'
8979 3' -55.9 NC_002512.2 + 181381 0.66 0.950641
Target:  5'- aGCCgCGCGUCGUCGugcgcccuggccuccGCCGGGgacgcguucaGGAugGCCg -3'
miRNA:   3'- gUGG-GCGUAGCAGU---------------CGGUCU----------UCU--CGG- -5'
8979 3' -55.9 NC_002512.2 + 218961 0.66 0.949012
Target:  5'- gACCCcucCGUCGcCGGCUGGGAGguccGGCCc -3'
miRNA:   3'- gUGGGc--GUAGCaGUCGGUCUUC----UCGG- -5'
8979 3' -55.9 NC_002512.2 + 166195 0.66 0.963748
Target:  5'- -cCCCGUGgccuucUUGggCGGCgAGGAGGGCCg -3'
miRNA:   3'- guGGGCGU------AGCa-GUCGgUCUUCUCGG- -5'
8979 3' -55.9 NC_002512.2 + 197325 0.66 0.963748
Target:  5'- gCACCCGCggCGcccggCGGCUggAGAAGAuCCc -3'
miRNA:   3'- -GUGGGCGuaGCa----GUCGG--UCUUCUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.