miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 5' -68.2 NC_002512.2 + 30257 0.66 0.500475
Target:  5'- aCgGGUcCCCGCGGaCGCgCGGagcCGGCg- -3'
miRNA:   3'- -GgCCGuGGGCGCC-GCGgGCC---GCCGac -5'
8979 5' -68.2 NC_002512.2 + 151885 0.66 0.474951
Target:  5'- gCCGGCgAUCCGCGGauCGUuuCCGGUaGGCa- -3'
miRNA:   3'- -GGCCG-UGGGCGCC--GCG--GGCCG-CCGac -5'
8979 5' -68.2 NC_002512.2 + 31660 0.66 0.517822
Target:  5'- aCGGCGCgggCGCGGC-CgUGGUGGCg- -3'
miRNA:   3'- gGCCGUGg--GCGCCGcGgGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 84525 0.66 0.500475
Target:  5'- gUCGuaGCCCucguagcCGGCGUCgGGCGGCg- -3'
miRNA:   3'- -GGCcgUGGGc------GCCGCGGgCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 121328 0.66 0.517822
Target:  5'- aCaGCACCgGuCGGaagGCCCGGCGGa-- -3'
miRNA:   3'- gGcCGUGGgC-GCCg--CGGGCCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 137329 0.66 0.48085
Target:  5'- gUCGGCGCCuccgacgucgucgcCGCGGcCGCCgCGGCcgGGUa- -3'
miRNA:   3'- -GGCCGUGG--------------GCGCC-GCGG-GCCG--CCGac -5'
8979 5' -68.2 NC_002512.2 + 91696 0.66 0.474951
Target:  5'- aCGGUAggaugUCCGCGaugcacacGCaGCCCGGCGGgUGc -3'
miRNA:   3'- gGCCGU-----GGGCGC--------CG-CGGGCCGCCgAC- -5'
8979 5' -68.2 NC_002512.2 + 60741 0.66 0.509117
Target:  5'- aCC-GCGaCCGCGGCgGCCgGGCGGaCg- -3'
miRNA:   3'- -GGcCGUgGGCGCCG-CGGgCCGCC-Gac -5'
8979 5' -68.2 NC_002512.2 + 6324 0.66 0.500475
Target:  5'- gCCGcCGCCCGCggggggaccgGGCGCggggCCGGCGGg-- -3'
miRNA:   3'- -GGCcGUGGGCG----------CCGCG----GGCCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 11907 0.66 0.500475
Target:  5'- cCCGaaGCugCCgaggaaGCGGCGCUCGGCaaauaGGCa- -3'
miRNA:   3'- -GGC--CGugGG------CGCCGCGGGCCG-----CCGac -5'
8979 5' -68.2 NC_002512.2 + 83936 0.66 0.517822
Target:  5'- cCCGGCGCauguCGCGcaGCaggucgaagaaGuCCCGGCGGCg- -3'
miRNA:   3'- -GGCCGUGg---GCGC--CG-----------C-GGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 152800 0.66 0.483389
Target:  5'- cUCGGaggUCCGCGGCGacggCgGGCGGCg- -3'
miRNA:   3'- -GGCCgu-GGGCGCCGCg---GgCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 133160 0.66 0.517822
Target:  5'- uCCGGUuCCCGCGGgccgGCCC-GCGGg-- -3'
miRNA:   3'- -GGCCGuGGGCGCCg---CGGGcCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 107496 0.66 0.491897
Target:  5'- aCCGGC-CCgcaGCGGU-CUCuGCGGCUGg -3'
miRNA:   3'- -GGCCGuGGg--CGCCGcGGGcCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 129304 0.66 0.483389
Target:  5'- gCGGUuuccccACCCGa-GCGCCCGGCGcuuCUGc -3'
miRNA:   3'- gGCCG------UGGGCgcCGCGGGCCGCc--GAC- -5'
8979 5' -68.2 NC_002512.2 + 8043 0.66 0.500475
Target:  5'- cCCGGU-CCCGaGGCGCCCccGCGGg-- -3'
miRNA:   3'- -GGCCGuGGGCgCCGCGGGc-CGCCgac -5'
8979 5' -68.2 NC_002512.2 + 135643 0.66 0.503924
Target:  5'- uCCGGguCGCCgGCGGCcugaucgcgacccagGCCUcggaGGCGGCg- -3'
miRNA:   3'- -GGCC--GUGGgCGCCG---------------CGGG----CCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 17865 0.66 0.474951
Target:  5'- gCGGUGCUCGCGcaGgGCCCGGgGGaCg- -3'
miRNA:   3'- gGCCGUGGGCGC--CgCGGGCCgCC-Gac -5'
8979 5' -68.2 NC_002512.2 + 80918 0.66 0.500475
Target:  5'- gUGGguCgCGCgGGCGCCCucccGGCGGUa- -3'
miRNA:   3'- gGCCguGgGCG-CCGCGGG----CCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 42575 0.66 0.472434
Target:  5'- gCgGGCGCCgcgaggcgaGCGGCggggcggacccgaaGCCCGGgGGCa- -3'
miRNA:   3'- -GgCCGUGGg--------CGCCG--------------CGGGCCgCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.