miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 5' -68.2 NC_002512.2 + 129304 0.66 0.483389
Target:  5'- gCGGUuuccccACCCGa-GCGCCCGGCGcuuCUGc -3'
miRNA:   3'- gGCCG------UGGGCgcCGCGGGCCGCc--GAC- -5'
8979 5' -68.2 NC_002512.2 + 106680 0.66 0.474951
Target:  5'- gUCGGUACgcgUCGCGGUGUUCGGCgauggGGCUc -3'
miRNA:   3'- -GGCCGUG---GGCGCCGCGGGCCG-----CCGAc -5'
8979 5' -68.2 NC_002512.2 + 11907 0.66 0.500475
Target:  5'- cCCGaaGCugCCgaggaaGCGGCGCUCGGCaaauaGGCa- -3'
miRNA:   3'- -GGC--CGugGG------CGCCGCGGGCCG-----CCGac -5'
8979 5' -68.2 NC_002512.2 + 90115 0.66 0.483389
Target:  5'- uCUGGa--UCGCgGGCGCCCGGUGcGCg- -3'
miRNA:   3'- -GGCCgugGGCG-CCGCGGGCCGC-CGac -5'
8979 5' -68.2 NC_002512.2 + 91696 0.66 0.474951
Target:  5'- aCGGUAggaugUCCGCGaugcacacGCaGCCCGGCGGgUGc -3'
miRNA:   3'- gGCCGU-----GGGCGC--------CG-CGGGCCGCCgAC- -5'
8979 5' -68.2 NC_002512.2 + 101590 0.66 0.491897
Target:  5'- -gGGUcCCCGCGGuCGUgCGgGCGGCc- -3'
miRNA:   3'- ggCCGuGGGCGCC-GCGgGC-CGCCGac -5'
8979 5' -68.2 NC_002512.2 + 12400 0.66 0.474951
Target:  5'- gCGGCGgCgGCGGCGCCgGgaucGCGaGCUc -3'
miRNA:   3'- gGCCGUgGgCGCCGCGGgC----CGC-CGAc -5'
8979 5' -68.2 NC_002512.2 + 90916 0.66 0.491897
Target:  5'- aCUGGCGgCCGCgaacGGgGCCgGcGCGGCc- -3'
miRNA:   3'- -GGCCGUgGGCG----CCgCGGgC-CGCCGac -5'
8979 5' -68.2 NC_002512.2 + 120777 0.66 0.483389
Target:  5'- cUCGGCGgCCgucggcggggGCGGCGggaCGGCGGCg- -3'
miRNA:   3'- -GGCCGUgGG----------CGCCGCgg-GCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 3513 0.66 0.491897
Target:  5'- gUCGGCccuccacccgaGCCCGCGGgGCCCGaagccCGGgUa -3'
miRNA:   3'- -GGCCG-----------UGGGCGCCgCGGGCc----GCCgAc -5'
8979 5' -68.2 NC_002512.2 + 101105 0.66 0.474951
Target:  5'- cCCGGCcaGCgCGCGGCGC--GGCGuGCg- -3'
miRNA:   3'- -GGCCG--UGgGCGCCGCGggCCGC-CGac -5'
8979 5' -68.2 NC_002512.2 + 107496 0.66 0.491897
Target:  5'- aCCGGC-CCgcaGCGGU-CUCuGCGGCUGg -3'
miRNA:   3'- -GGCCGuGGg--CGCCGcGGGcCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 17865 0.66 0.474951
Target:  5'- gCGGUGCUCGCGcaGgGCCCGGgGGaCg- -3'
miRNA:   3'- gGCCGUGGGCGC--CgCGGGCCgCC-Gac -5'
8979 5' -68.2 NC_002512.2 + 137329 0.66 0.48085
Target:  5'- gUCGGCGCCuccgacgucgucgcCGCGGcCGCCgCGGCcgGGUa- -3'
miRNA:   3'- -GGCCGUGG--------------GCGCC-GCGG-GCCG--CCGac -5'
8979 5' -68.2 NC_002512.2 + 152800 0.66 0.483389
Target:  5'- cUCGGaggUCCGCGGCGacggCgGGCGGCg- -3'
miRNA:   3'- -GGCCgu-GGGCGCCGCg---GgCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 151885 0.66 0.474951
Target:  5'- gCCGGCgAUCCGCGGauCGUuuCCGGUaGGCa- -3'
miRNA:   3'- -GGCCG-UGGGCGCC--GCG--GGCCG-CCGac -5'
8979 5' -68.2 NC_002512.2 + 42575 0.66 0.472434
Target:  5'- gCgGGCGCCgcgaggcgaGCGGCggggcggacccgaaGCCCGGgGGCa- -3'
miRNA:   3'- -GgCCGUGGg--------CGCCG--------------CGGGCCgCCGac -5'
8979 5' -68.2 NC_002512.2 + 133992 0.66 0.491897
Target:  5'- gUCGGCACCCGgccgGGCGaccucgagaucCUCGGCGcGCg- -3'
miRNA:   3'- -GGCCGUGGGCg---CCGC-----------GGGCCGC-CGac -5'
8979 5' -68.2 NC_002512.2 + 112007 0.66 0.474951
Target:  5'- aCgGGC-CCC-CGGCGUCCGucuuGCGGCc- -3'
miRNA:   3'- -GgCCGuGGGcGCCGCGGGC----CGCCGac -5'
8979 5' -68.2 NC_002512.2 + 65449 0.66 0.474951
Target:  5'- -gGGCGCCgaGCGGCuuCCCGGCGacCUGc -3'
miRNA:   3'- ggCCGUGGg-CGCCGc-GGGCCGCc-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.