miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 5' -68.2 NC_002512.2 + 197321 1.09 0.00048
Target:  5'- cCCGGCACCCGCGGCGCCCGGCGGCUGg -3'
miRNA:   3'- -GGCCGUGGGCGCCGCGGGCCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 119229 0.83 0.037267
Target:  5'- aCCGGCuGCCCGCGGuCGagCGGCGGCUGg -3'
miRNA:   3'- -GGCCG-UGGGCGCC-GCggGCCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 160824 0.79 0.069875
Target:  5'- cCCGGCACCagcagGCgGGCGgCCGGCGGCg- -3'
miRNA:   3'- -GGCCGUGGg----CG-CCGCgGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 69059 0.79 0.0733
Target:  5'- gCCGGcCGCCCGCcugcuGGUGCCgGgGCGGCUGg -3'
miRNA:   3'- -GGCC-GUGGGCG-----CCGCGGgC-CGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 180554 0.79 0.0733
Target:  5'- aUCGGCGCuuGCGGCGggcUCCGGUGGCUc -3'
miRNA:   3'- -GGCCGUGggCGCCGC---GGGCCGCCGAc -5'
8979 5' -68.2 NC_002512.2 + 130134 0.79 0.07874
Target:  5'- cCCGggguggugucGCGgCCGCGGgGCCCGGCGGCg- -3'
miRNA:   3'- -GGC----------CGUgGGCGCCgCGGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 133585 0.78 0.086598
Target:  5'- aCCGGCccGCCCGCGGCggcgGCCCG-CGGCa- -3'
miRNA:   3'- -GGCCG--UGGGCGCCG----CGGGCcGCCGac -5'
8979 5' -68.2 NC_002512.2 + 38940 0.78 0.090801
Target:  5'- gCgGGCGCCCGCGuGCGCCCGGgucUGGUUc -3'
miRNA:   3'- -GgCCGUGGGCGC-CGCGGGCC---GCCGAc -5'
8979 5' -68.2 NC_002512.2 + 45514 0.78 0.092975
Target:  5'- gCCGaaaGCGCCCGCGGCGggCGGCGGCg- -3'
miRNA:   3'- -GGC---CGUGGGCGCCGCggGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 17052 0.77 0.095197
Target:  5'- aCGGCGCCCGCGcCcaacCCCGGCGGCg- -3'
miRNA:   3'- gGCCGUGGGCGCcGc---GGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 34829 0.77 0.097471
Target:  5'- aCCGGacgacccuccCGCCCGCGG-GCCgCGGCGGCUu -3'
miRNA:   3'- -GGCC----------GUGGGCGCCgCGG-GCCGCCGAc -5'
8979 5' -68.2 NC_002512.2 + 101038 0.76 0.109625
Target:  5'- -gGGC-CCgCGCGGCGCCCGaGCGGUg- -3'
miRNA:   3'- ggCCGuGG-GCGCCGCGGGC-CGCCGac -5'
8979 5' -68.2 NC_002512.2 + 122032 0.76 0.112221
Target:  5'- aUCGGCGCUCGCGcaCGCCCggggcggcgucGGCGGCUGu -3'
miRNA:   3'- -GGCCGUGGGCGCc-GCGGG-----------CCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 101425 0.76 0.114874
Target:  5'- -gGGCACa-GCGGCGgCCGGCGGCg- -3'
miRNA:   3'- ggCCGUGggCGCCGCgGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 114184 0.76 0.114874
Target:  5'- gUGGCGCCgGCGucGgGCCCGGCGGCc- -3'
miRNA:   3'- gGCCGUGGgCGC--CgCGGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 21465 0.76 0.117586
Target:  5'- gCCGGCGCCgggaGCGGCGCCCGuaGaGCa- -3'
miRNA:   3'- -GGCCGUGGg---CGCCGCGGGCcgC-CGac -5'
8979 5' -68.2 NC_002512.2 + 9579 0.76 0.117586
Target:  5'- cCCGGC-CCC-CGGCccCCCGGCGGCUc -3'
miRNA:   3'- -GGCCGuGGGcGCCGc-GGGCCGCCGAc -5'
8979 5' -68.2 NC_002512.2 + 80741 0.76 0.120357
Target:  5'- aCCGGC-CCCGCGGCGgucccggguCCCGGgGGUc- -3'
miRNA:   3'- -GGCCGuGGGCGCCGC---------GGGCCgCCGac -5'
8979 5' -68.2 NC_002512.2 + 3072 0.76 0.120357
Target:  5'- gCGGCGgCgGCGGCgGCCaCGGCGGCg- -3'
miRNA:   3'- gGCCGUgGgCGCCG-CGG-GCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 108173 0.76 0.120357
Target:  5'- gCCGGCGCCUucuGCGGCGUUCagGGCGGCc- -3'
miRNA:   3'- -GGCCGUGGG---CGCCGCGGG--CCGCCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.