Results 1 - 20 of 390 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 115872 | 0.74 | 0.151588 |
Target: 5'- cCCGGUGCCgcUGCGGgGCCgaCGGCGGCg- -3' miRNA: 3'- -GGCCGUGG--GCGCCgCGG--GCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 80741 | 0.76 | 0.120357 |
Target: 5'- aCCGGC-CCCGCGGCGgucccggguCCCGGgGGUc- -3' miRNA: 3'- -GGCCGuGGGCGCCGC---------GGGCCgCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 12789 | 0.76 | 0.123189 |
Target: 5'- gCGGCGCCCccgcugccccuGCGGaUGCUCgGGCGGCUGa -3' miRNA: 3'- gGCCGUGGG-----------CGCC-GCGGG-CCGCCGAC- -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 24841 | 0.76 | 0.123189 |
Target: 5'- uCCGG-GCCCGCGGcCGgUCGGCGGCg- -3' miRNA: 3'- -GGCCgUGGGCGCC-GCgGGCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 118089 | 0.76 | 0.123189 |
Target: 5'- uCCGGCGCCgGCGGCGaCCGcGCGGa-- -3' miRNA: 3'- -GGCCGUGGgCGCCGCgGGC-CGCCgac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 122002 | 0.75 | 0.135145 |
Target: 5'- aUCGGCGCCCGgaGGgGCCggaGGCGGCg- -3' miRNA: 3'- -GGCCGUGGGCg-CCgCGGg--CCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 153968 | 0.75 | 0.141516 |
Target: 5'- uCgGGguCCgGCGGCGCCggCGGCGGCa- -3' miRNA: 3'- -GgCCguGGgCGCCGCGG--GCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 35259 | 0.75 | 0.14816 |
Target: 5'- aCgGGCAgguccCCCGCGGCgacgGCCgCGGCGGCg- -3' miRNA: 3'- -GgCCGU-----GGGCGCCG----CGG-GCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 106301 | 0.74 | 0.151588 |
Target: 5'- gCGGCguccucucagACCCGCaGCGCCuuCGGCGGCUc -3' miRNA: 3'- gGCCG----------UGGGCGcCGCGG--GCCGCCGAc -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 3072 | 0.76 | 0.120357 |
Target: 5'- gCGGCGgCgGCGGCgGCCaCGGCGGCg- -3' miRNA: 3'- gGCCGUgGgCGCCG-CGG-GCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 21465 | 0.76 | 0.117586 |
Target: 5'- gCCGGCGCCgggaGCGGCGCCCGuaGaGCa- -3' miRNA: 3'- -GGCCGUGGg---CGCCGCGGGCcgC-CGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 9579 | 0.76 | 0.117586 |
Target: 5'- cCCGGC-CCC-CGGCccCCCGGCGGCUc -3' miRNA: 3'- -GGCCGuGGGcGCCGc-GGGCCGCCGAc -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 69059 | 0.79 | 0.0733 |
Target: 5'- gCCGGcCGCCCGCcugcuGGUGCCgGgGCGGCUGg -3' miRNA: 3'- -GGCC-GUGGGCG-----CCGCGGgC-CGCCGAC- -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 130134 | 0.79 | 0.07874 |
Target: 5'- cCCGggguggugucGCGgCCGCGGgGCCCGGCGGCg- -3' miRNA: 3'- -GGC----------CGUgGGCGCCgCGGGCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 38940 | 0.78 | 0.090801 |
Target: 5'- gCgGGCGCCCGCGuGCGCCCGGgucUGGUUc -3' miRNA: 3'- -GgCCGUGGGCGC-CGCGGGCC---GCCGAc -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 45514 | 0.78 | 0.092975 |
Target: 5'- gCCGaaaGCGCCCGCGGCGggCGGCGGCg- -3' miRNA: 3'- -GGC---CGUGGGCGCCGCggGCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 17052 | 0.77 | 0.095197 |
Target: 5'- aCGGCGCCCGCGcCcaacCCCGGCGGCg- -3' miRNA: 3'- gGCCGUGGGCGCcGc---GGGCCGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 34829 | 0.77 | 0.097471 |
Target: 5'- aCCGGacgacccuccCGCCCGCGG-GCCgCGGCGGCUu -3' miRNA: 3'- -GGCC----------GUGGGCGCCgCGG-GCCGCCGAc -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 101038 | 0.76 | 0.109625 |
Target: 5'- -gGGC-CCgCGCGGCGCCCGaGCGGUg- -3' miRNA: 3'- ggCCGuGG-GCGCCGCGGGC-CGCCGac -5' |
|||||||
8979 | 5' | -68.2 | NC_002512.2 | + | 122032 | 0.76 | 0.112221 |
Target: 5'- aUCGGCGCUCGCGcaCGCCCggggcggcgucGGCGGCUGu -3' miRNA: 3'- -GGCCGUGGGCGCc-GCGGG-----------CCGCCGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home