miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 5' -68.2 NC_002512.2 + 323 0.7 0.29882
Target:  5'- cCCGGCGCgcgcuccuCCGcCGGCGCCCcGCccGGCUc -3'
miRNA:   3'- -GGCCGUG--------GGC-GCCGCGGGcCG--CCGAc -5'
8979 5' -68.2 NC_002512.2 + 1734 0.69 0.343835
Target:  5'- uCCGGC-UCCGCGuggaccugagcucGCGCCCGuCGGCg- -3'
miRNA:   3'- -GGCCGuGGGCGC-------------CGCGGGCcGCCGac -5'
8979 5' -68.2 NC_002512.2 + 1901 0.68 0.365591
Target:  5'- uCCGGCccucgGCCCuCGGCGCCgGGgcccuccucucCGGCUc -3'
miRNA:   3'- -GGCCG-----UGGGcGCCGCGGgCC-----------GCCGAc -5'
8979 5' -68.2 NC_002512.2 + 2060 0.69 0.335667
Target:  5'- gCGGCGCCaGCGGgagcgcggaguccaCGCCgGGCGGgaGc -3'
miRNA:   3'- gGCCGUGGgCGCC--------------GCGGgCCGCCgaC- -5'
8979 5' -68.2 NC_002512.2 + 2421 0.67 0.466588
Target:  5'- gCCGGcCGCCCcCGGCcucuccCCCGGCaGCg- -3'
miRNA:   3'- -GGCC-GUGGGcGCCGc-----GGGCCGcCGac -5'
8979 5' -68.2 NC_002512.2 + 2467 0.69 0.337696
Target:  5'- gCCcGCGCCCGCGcGCGagaguagguCCgGGCGGCc- -3'
miRNA:   3'- -GGcCGUGGGCGC-CGC---------GGgCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 2820 0.7 0.274883
Target:  5'- cCCGGCGCgggCGCGG-GCCCGGacgaCGGCg- -3'
miRNA:   3'- -GGCCGUGg--GCGCCgCGGGCC----GCCGac -5'
8979 5' -68.2 NC_002512.2 + 3020 0.66 0.500475
Target:  5'- cCUGGCcuCCCG-GGCcucCCUGGCGGCc- -3'
miRNA:   3'- -GGCCGu-GGGCgCCGc--GGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 3072 0.76 0.120357
Target:  5'- gCGGCGgCgGCGGCgGCCaCGGCGGCg- -3'
miRNA:   3'- gGCCGUgGgCGCCG-CGG-GCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 3376 0.68 0.413424
Target:  5'- gCGGCagggccgccagcaggACCCGCGGCgaggggagcGCCCGGgcccCGGCc- -3'
miRNA:   3'- gGCCG---------------UGGGCGCCG---------CGGGCC----GCCGac -5'
8979 5' -68.2 NC_002512.2 + 3513 0.66 0.491897
Target:  5'- gUCGGCccuccacccgaGCCCGCGGgGCCCGaagccCGGgUa -3'
miRNA:   3'- -GGCCG-----------UGGGCGCCgCGGGCc----GCCgAc -5'
8979 5' -68.2 NC_002512.2 + 3671 0.68 0.387532
Target:  5'- uCCGGCuCCC-CGGUgaugGCCCGGCcGCg- -3'
miRNA:   3'- -GGCCGuGGGcGCCG----CGGGCCGcCGac -5'
8979 5' -68.2 NC_002512.2 + 4090 0.74 0.151588
Target:  5'- cCCGGcCGCCCGCG--GCCCGGcCGGCg- -3'
miRNA:   3'- -GGCC-GUGGGCGCcgCGGGCC-GCCGac -5'
8979 5' -68.2 NC_002512.2 + 4385 0.71 0.243983
Target:  5'- cCCGGgAccCCCGCGGCGgccCCguagaucgcggucgaCGGCGGCUGc -3'
miRNA:   3'- -GGCCgU--GGGCGCCGC---GG---------------GCCGCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 4554 0.71 0.236723
Target:  5'- gCGGCGCgaccgacggCUGCGGCGUCUggGGCGGCg- -3'
miRNA:   3'- gGCCGUG---------GGCGCCGCGGG--CCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 5065 0.67 0.441969
Target:  5'- uCCaGCccGCCCGCGGCGUuggucgucgucgCCGGCgucGGCg- -3'
miRNA:   3'- -GGcCG--UGGGCGCCGCG------------GGCCG---CCGac -5'
8979 5' -68.2 NC_002512.2 + 5200 0.67 0.441969
Target:  5'- gCgGGCAggaCCGCGGgccaGCCgaCGGCGGCg- -3'
miRNA:   3'- -GgCCGUg--GGCGCCg---CGG--GCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 5245 0.68 0.372809
Target:  5'- uCgGGCGCguaggccgaggCCGCGGCggcgaccccgaGCCCGGuCGGCa- -3'
miRNA:   3'- -GgCCGUG-----------GGCGCCG-----------CGGGCC-GCCGac -5'
8979 5' -68.2 NC_002512.2 + 5360 0.66 0.509117
Target:  5'- cCCGGgACCUGUGGUcCuCCGGCucuGGCg- -3'
miRNA:   3'- -GGCCgUGGGCGCCGcG-GGCCG---CCGac -5'
8979 5' -68.2 NC_002512.2 + 6324 0.66 0.500475
Target:  5'- gCCGcCGCCCGCggggggaccgGGCGCggggCCGGCGGg-- -3'
miRNA:   3'- -GGCcGUGGGCG----------CCGCG----GGCCGCCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.