miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8979 5' -68.2 NC_002512.2 + 212155 0.66 0.509117
Target:  5'- gCgGGCACUgGCGGCG---GGaCGGCUGg -3'
miRNA:   3'- -GgCCGUGGgCGCCGCgggCC-GCCGAC- -5'
8979 5' -68.2 NC_002512.2 + 154340 0.66 0.50825
Target:  5'- cCCGGCgaGCCCGCGGauUUuuuugggacaagaUGGCGGCUu -3'
miRNA:   3'- -GGCCG--UGGGCGCCgcGG-------------GCCGCCGAc -5'
8979 5' -68.2 NC_002512.2 + 127557 0.66 0.503924
Target:  5'- cCCGGCucgucguccgggagGCCCGaCGGaccguccgcgacguCGCCCuGGCGGUc- -3'
miRNA:   3'- -GGCCG--------------UGGGC-GCC--------------GCGGG-CCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 135643 0.66 0.503924
Target:  5'- uCCGGguCGCCgGCGGCcugaucgcgacccagGCCUcggaGGCGGCg- -3'
miRNA:   3'- -GGCC--GUGGgCGCCG---------------CGGG----CCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 113155 0.66 0.500475
Target:  5'- gCCGGC-CUCGCcGCgGCCgGGCGGg-- -3'
miRNA:   3'- -GGCCGuGGGCGcCG-CGGgCCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 98145 0.66 0.500475
Target:  5'- gCGGcCGCCCGCcccGGCGgUCGccGCGGuCUGg -3'
miRNA:   3'- gGCC-GUGGGCG---CCGCgGGC--CGCC-GAC- -5'
8979 5' -68.2 NC_002512.2 + 224344 0.66 0.500475
Target:  5'- gCGGCGCCgCGcCGGgGUCgCGgGCGGgaGa -3'
miRNA:   3'- gGCCGUGG-GC-GCCgCGG-GC-CGCCgaC- -5'
8979 5' -68.2 NC_002512.2 + 30257 0.66 0.500475
Target:  5'- aCgGGUcCCCGCGGaCGCgCGGagcCGGCg- -3'
miRNA:   3'- -GgCCGuGGGCGCC-GCGgGCC---GCCGac -5'
8979 5' -68.2 NC_002512.2 + 129976 0.66 0.500475
Target:  5'- uUCGGCggGCCCcCGGCGCCCucgacgGGCcGCg- -3'
miRNA:   3'- -GGCCG--UGGGcGCCGCGGG------CCGcCGac -5'
8979 5' -68.2 NC_002512.2 + 100581 0.66 0.500475
Target:  5'- gCCgGGCGCUCGgGuggggaaaccGCGCCCG-CGGCUc -3'
miRNA:   3'- -GG-CCGUGGGCgC----------CGCGGGCcGCCGAc -5'
8979 5' -68.2 NC_002512.2 + 11907 0.66 0.500475
Target:  5'- cCCGaaGCugCCgaggaaGCGGCGCUCGGCaaauaGGCa- -3'
miRNA:   3'- -GGC--CGugGG------CGCCGCGGGCCG-----CCGac -5'
8979 5' -68.2 NC_002512.2 + 56253 0.66 0.500475
Target:  5'- cCCGG-ACCCGgGGUucgccGCCgCGGCGGa-- -3'
miRNA:   3'- -GGCCgUGGGCgCCG-----CGG-GCCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 8043 0.66 0.500475
Target:  5'- cCCGGU-CCCGaGGCGCCCccGCGGg-- -3'
miRNA:   3'- -GGCCGuGGGCgCCGCGGGc-CGCCgac -5'
8979 5' -68.2 NC_002512.2 + 137999 0.66 0.500475
Target:  5'- gCCGuGCGCCgCGCcgccgcccGCGCCggaCGGCGGCc- -3'
miRNA:   3'- -GGC-CGUGG-GCGc-------CGCGG---GCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 6324 0.66 0.500475
Target:  5'- gCCGcCGCCCGCggggggaccgGGCGCggggCCGGCGGg-- -3'
miRNA:   3'- -GGCcGUGGGCG----------CCGCG----GGCCGCCgac -5'
8979 5' -68.2 NC_002512.2 + 124281 0.66 0.500475
Target:  5'- gCCGGUGCCU-CGGCGCCUGcauGauGCUGu -3'
miRNA:   3'- -GGCCGUGGGcGCCGCGGGC---CgcCGAC- -5'
8979 5' -68.2 NC_002512.2 + 3020 0.66 0.500475
Target:  5'- cCUGGCcuCCCG-GGCcucCCUGGCGGCc- -3'
miRNA:   3'- -GGCCGu-GGGCgCCGc--GGGCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 80918 0.66 0.500475
Target:  5'- gUGGguCgCGCgGGCGCCCucccGGCGGUa- -3'
miRNA:   3'- gGCCguGgGCG-CCGCGGG----CCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 84525 0.66 0.500475
Target:  5'- gUCGuaGCCCucguagcCGGCGUCgGGCGGCg- -3'
miRNA:   3'- -GGCcgUGGGc------GCCGCGGgCCGCCGac -5'
8979 5' -68.2 NC_002512.2 + 143751 0.66 0.499614
Target:  5'- gCGGCGucggcuuccaggUCCGCGaccuccuccGCGCCCGGguccaugagccgcCGGCUGu -3'
miRNA:   3'- gGCCGU------------GGGCGC---------CGCGGGCC-------------GCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.