miRNA display CGI


Results 41 - 60 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 80417 0.68 0.93242
Target:  5'- gGUGGcgugGCU-GUCGGCGGCGUCccGg -3'
miRNA:   3'- gCGCCua--CGAgUAGCUGCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 80676 0.68 0.93242
Target:  5'- cCGCGGcgGCggcgaCGggggCGAgCGGCGUCcgGg -3'
miRNA:   3'- -GCGCCuaCGa----GUa---GCU-GCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 116896 0.68 0.927374
Target:  5'- gGCGGGgccggggcggGCUCcUCgGACGGCGUCc-- -3'
miRNA:   3'- gCGCCUa---------CGAGuAG-CUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 171782 0.68 0.922101
Target:  5'- uCGCGGAggugGCUCAccucguccCGACGGCG-CGc- -3'
miRNA:   3'- -GCGCCUa---CGAGUa-------GCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 226581 0.68 0.922101
Target:  5'- gGCGGAUgGCgaggaggCAUCGugGGCGg---- -3'
miRNA:   3'- gCGCCUA-CGa------GUAGCugCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 189637 0.68 0.921561
Target:  5'- uCGCGGucgGCuUCGUCGGgacgcgccgacacCGGCGUCGg- -3'
miRNA:   3'- -GCGCCua-CG-AGUAGCU-------------GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 217801 0.68 0.921561
Target:  5'- gGCGGAUcgGCgucgccgucccgaUCGUCGACGGCGggCGg- -3'
miRNA:   3'- gCGCCUA--CG-------------AGUAGCUGCCGCa-GUac -5'
8980 5' -55.1 NC_002512.2 + 215049 0.68 0.916602
Target:  5'- cCGaGGA-GCUCAccgucgUCGGCGGCGUCu-- -3'
miRNA:   3'- -GCgCCUaCGAGU------AGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 180284 0.69 0.913194
Target:  5'- gGCGGcgGCguuccCGUCGcccucgacaggcgcaGCGGCGUCGUc -3'
miRNA:   3'- gCGCCuaCGa----GUAGC---------------UGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 129384 0.69 0.910878
Target:  5'- uGCGGGUGCUCGaCGACcGCGg---- -3'
miRNA:   3'- gCGCCUACGAGUaGCUGcCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 204825 0.69 0.910877
Target:  5'- gCGCGGcgGCUcCGUccgggaggaCGACGGCGgucgguccUCGUGg -3'
miRNA:   3'- -GCGCCuaCGA-GUA---------GCUGCCGC--------AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 195812 0.69 0.910877
Target:  5'- uGCGGGgacaUCGUCGACGccgcCGUCGUGg -3'
miRNA:   3'- gCGCCUacg-AGUAGCUGCc---GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 191332 0.69 0.910877
Target:  5'- aCGCGGGUGCcgUCcgCGACGGgGg---- -3'
miRNA:   3'- -GCGCCUACG--AGuaGCUGCCgCaguac -5'
8980 5' -55.1 NC_002512.2 + 114228 0.69 0.910877
Target:  5'- gGCGGugAUGUgguccUCAUCGACGGCGaCcgGc -3'
miRNA:   3'- gCGCC--UACG-----AGUAGCUGCCGCaGuaC- -5'
8980 5' -55.1 NC_002512.2 + 209287 0.69 0.910877
Target:  5'- aCGUGGAgcgcUGCgUCAaggagaaCGGCGGCGUCAg- -3'
miRNA:   3'- -GCGCCU----ACG-AGUa------GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 87195 0.69 0.910293
Target:  5'- cCGCGGuguucgaGUGCUCggUGACGGCccUCGUGc -3'
miRNA:   3'- -GCGCC-------UACGAGuaGCUGCCGc-AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 215460 0.69 0.898758
Target:  5'- aGCGGG---UCAUCGcCGGCGUCGa- -3'
miRNA:   3'- gCGCCUacgAGUAGCuGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 223628 0.69 0.892368
Target:  5'- uCGCuGGUGCUgcUCGGCGGgcuCGUCAUGc -3'
miRNA:   3'- -GCGcCUACGAguAGCUGCC---GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 190680 0.7 0.87475
Target:  5'- uGCGGcuggagcccAUGUUCAcggucaaggccuacgUCGACGGCGUC-UGg -3'
miRNA:   3'- gCGCC---------UACGAGU---------------AGCUGCCGCAGuAC- -5'
8980 5' -55.1 NC_002512.2 + 127832 0.7 0.871914
Target:  5'- -cCGGGaGgUCGUCGGCGGCGUCc-- -3'
miRNA:   3'- gcGCCUaCgAGUAGCUGCCGCAGuac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.