miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 96817 0.67 0.961496
Target:  5'- aCGUGGAcGCU-GUCGauccuaugcugcGCGGCGUCGUu -3'
miRNA:   3'- -GCGCCUaCGAgUAGC------------UGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 144556 0.67 0.959421
Target:  5'- gCGCGGAaGCUCcaaccggcgaccuacGUCGAgcggcaGGCGUCGa- -3'
miRNA:   3'- -GCGCCUaCGAG---------------UAGCUg-----CCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 134760 0.67 0.957995
Target:  5'- gGCGGAccguccgGUUCGUCGGCGGgcccgcCGUCGc- -3'
miRNA:   3'- gCGCCUa------CGAGUAGCUGCC------GCAGUac -5'
8980 5' -55.1 NC_002512.2 + 117118 0.67 0.954281
Target:  5'- aGCGGcacgggGCccCGUCGGCGGCGUUc-- -3'
miRNA:   3'- gCGCCua----CGa-GUAGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 17429 0.67 0.954281
Target:  5'- gGCGGAUGCccUCcUCG-CGGCGgUCGc- -3'
miRNA:   3'- gCGCCUACG--AGuAGCuGCCGC-AGUac -5'
8980 5' -55.1 NC_002512.2 + 156048 0.67 0.95195
Target:  5'- uGCGGGUcgucgacacggcgagGCUCAUCGACgccgGGCGcCGg- -3'
miRNA:   3'- gCGCCUA---------------CGAGUAGCUG----CCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 203375 0.67 0.950352
Target:  5'- cCGCGGuUGCUCAgcaucaggaaCGGCaGCGUCGc- -3'
miRNA:   3'- -GCGCCuACGAGUa---------GCUGcCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 78340 0.67 0.950352
Target:  5'- cCGCGGAagGUUCGUCaGuCGGCGUUc-- -3'
miRNA:   3'- -GCGCCUa-CGAGUAG-CuGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 122027 0.67 0.950352
Target:  5'- gGCGGAUcggcGCUCG-CGcacgcccgggGCGGCGUCGg- -3'
miRNA:   3'- gCGCCUA----CGAGUaGC----------UGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 209896 0.67 0.950352
Target:  5'- uCGCGGGgagcagggGCUCAUCGuCGucugcaaCGUCAUGc -3'
miRNA:   3'- -GCGCCUa-------CGAGUAGCuGCc------GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 91630 0.67 0.946204
Target:  5'- cCGCGGGgauCUCcagCGGguuCGGCGUCGUGu -3'
miRNA:   3'- -GCGCCUac-GAGua-GCU---GCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 167737 0.67 0.946204
Target:  5'- uGUGGGUGCUgAUggcggaUGGCGGUGUCccGg -3'
miRNA:   3'- gCGCCUACGAgUA------GCUGCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 166772 0.67 0.946204
Target:  5'- uCGuCGGGgugGgUUAUCGcCGGCGUCAUc -3'
miRNA:   3'- -GC-GCCUa--CgAGUAGCuGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 99094 0.67 0.946204
Target:  5'- cCGCGuGcUGCgCGUCGGCGGCccuccUCGUGg -3'
miRNA:   3'- -GCGC-CuACGaGUAGCUGCCGc----AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 124308 0.67 0.946203
Target:  5'- gCGCGGA-GCUgAUCGgggccGCGGCGgaCGUGc -3'
miRNA:   3'- -GCGCCUaCGAgUAGC-----UGCCGCa-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 12808 0.68 0.941833
Target:  5'- uGCGGAUGCUCG--GGCGGCu----- -3'
miRNA:   3'- gCGCCUACGAGUagCUGCCGcaguac -5'
8980 5' -55.1 NC_002512.2 + 91916 0.68 0.941384
Target:  5'- gGCGGcgGCgcgcCGUCGGCGGCcgacuugGUCuUGg -3'
miRNA:   3'- gCGCCuaCGa---GUAGCUGCCG-------CAGuAC- -5'
8980 5' -55.1 NC_002512.2 + 103457 0.68 0.937239
Target:  5'- gCGCGGGUccgaggacgcgGCUCGggucUCGGCGGCGgccgCGg- -3'
miRNA:   3'- -GCGCCUA-----------CGAGU----AGCUGCCGCa---GUac -5'
8980 5' -55.1 NC_002512.2 + 136354 0.68 0.936767
Target:  5'- uCGCGGGUcggucGCUCGUUGAUGGCcagcgacacgcacGcCAUGg -3'
miRNA:   3'- -GCGCCUA-----CGAGUAGCUGCCG-------------CaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 103467 0.68 0.93242
Target:  5'- gGCGGGaggaggagagGCggCGUCGACGGCGcCcgGg -3'
miRNA:   3'- gCGCCUa---------CGa-GUAGCUGCCGCaGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.