miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 90678 0.75 0.598192
Target:  5'- cCGCGGcgGC-CAgggccagguccUCGACGGCGUCGg- -3'
miRNA:   3'- -GCGCCuaCGaGU-----------AGCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 91630 0.67 0.946204
Target:  5'- cCGCGGGgauCUCcagCGGguuCGGCGUCGUGu -3'
miRNA:   3'- -GCGCCUac-GAGua-GCU---GCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 91916 0.68 0.941384
Target:  5'- gGCGGcgGCgcgcCGUCGGCGGCcgacuugGUCuUGg -3'
miRNA:   3'- gCGCCuaCGa---GUAGCUGCCG-------CAGuAC- -5'
8980 5' -55.1 NC_002512.2 + 96144 0.66 0.975993
Target:  5'- uCGCGGgcGCUCuccucgucGUCGcuguCGGUGUCGa- -3'
miRNA:   3'- -GCGCCuaCGAG--------UAGCu---GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 96817 0.67 0.961496
Target:  5'- aCGUGGAcGCU-GUCGauccuaugcugcGCGGCGUCGUu -3'
miRNA:   3'- -GCGCCUaCGAgUAGC------------UGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 99094 0.67 0.946204
Target:  5'- cCGCGuGcUGCgCGUCGGCGGCccuccUCGUGg -3'
miRNA:   3'- -GCGC-CuACGaGUAGCUGCCGc----AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 100290 0.67 0.961497
Target:  5'- aGCGGGgcgaGUUCGUCGGgGGCGaCGg- -3'
miRNA:   3'- gCGCCUa---CGAGUAGCUgCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 100828 0.73 0.707206
Target:  5'- aCGaGGAUGUUCAUCGGCGuGaCGUCAa- -3'
miRNA:   3'- -GCgCCUACGAGUAGCUGC-C-GCAGUac -5'
8980 5' -55.1 NC_002512.2 + 100886 0.7 0.84963
Target:  5'- aGCGGAUGC-CGUCGGCGa-GUCcgGu -3'
miRNA:   3'- gCGCCUACGaGUAGCUGCcgCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 102543 0.72 0.754986
Target:  5'- gGCGGGUcaGCUC-UCGuccGCGGCGUCgAUGg -3'
miRNA:   3'- gCGCCUA--CGAGuAGC---UGCCGCAG-UAC- -5'
8980 5' -55.1 NC_002512.2 + 103457 0.68 0.937239
Target:  5'- gCGCGGGUccgaggacgcgGCUCGggucUCGGCGGCGgccgCGg- -3'
miRNA:   3'- -GCGCCUA-----------CGAGU----AGCUGCCGCa---GUac -5'
8980 5' -55.1 NC_002512.2 + 103467 0.68 0.93242
Target:  5'- gGCGGGaggaggagagGCggCGUCGACGGCGcCcgGg -3'
miRNA:   3'- gCGCCUa---------CGa-GUAGCUGCCGCaGuaC- -5'
8980 5' -55.1 NC_002512.2 + 105047 0.75 0.588281
Target:  5'- uCGCGGGccucGCUCggCGACGGCGgCGUGu -3'
miRNA:   3'- -GCGCCUa---CGAGuaGCUGCCGCaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 108983 0.7 0.857253
Target:  5'- aGCaGGGccguguaccUGCUCGUCGgcgccgGCGGCGUCGUc -3'
miRNA:   3'- gCG-CCU---------ACGAGUAGC------UGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 114228 0.69 0.910877
Target:  5'- gGCGGugAUGUgguccUCAUCGACGGCGaCcgGc -3'
miRNA:   3'- gCGCC--UACG-----AGUAGCUGCCGCaGuaC- -5'
8980 5' -55.1 NC_002512.2 + 116896 0.68 0.927374
Target:  5'- gGCGGGgccggggcggGCUCcUCgGACGGCGUCc-- -3'
miRNA:   3'- gCGCCUa---------CGAGuAG-CUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 117118 0.67 0.954281
Target:  5'- aGCGGcacgggGCccCGUCGGCGGCGUUc-- -3'
miRNA:   3'- gCGCCua----CGa-GUAGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 119097 0.66 0.975993
Target:  5'- uCGCGGcgGacc-UgGugGGCGUCGUGu -3'
miRNA:   3'- -GCGCCuaCgaguAgCugCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 122027 0.67 0.950352
Target:  5'- gGCGGAUcggcGCUCG-CGcacgcccgggGCGGCGUCGg- -3'
miRNA:   3'- gCGCCUA----CGAGUaGC----------UGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 124308 0.67 0.946203
Target:  5'- gCGCGGA-GCUgAUCGgggccGCGGCGgaCGUGc -3'
miRNA:   3'- -GCGCCUaCGAgUAGC-----UGCCGCa-GUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.