miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 166952 0.7 0.84963
Target:  5'- aGCGGAUGUUCAUgGACaagcagcagcuGGCGcUCAa- -3'
miRNA:   3'- gCGCCUACGAGUAgCUG-----------CCGC-AGUac -5'
8980 5' -55.1 NC_002512.2 + 100886 0.7 0.84963
Target:  5'- aGCGGAUGC-CGUCGGCGa-GUCcgGu -3'
miRNA:   3'- gCGCCUACGaGUAGCUGCcgCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 130552 0.7 0.84963
Target:  5'- -cCGGAUGCUCGUCGAgGaguuCGUCGUa -3'
miRNA:   3'- gcGCCUACGAGUAGCUgCc---GCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 89415 0.7 0.84963
Target:  5'- gCGCGGAaccagGCcucgggCGUCGGCGGgGUCAc- -3'
miRNA:   3'- -GCGCCUa----CGa-----GUAGCUGCCgCAGUac -5'
8980 5' -55.1 NC_002512.2 + 108983 0.7 0.857253
Target:  5'- aGCaGGGccguguaccUGCUCGUCGgcgccgGCGGCGUCGUc -3'
miRNA:   3'- gCG-CCU---------ACGAGUAGC------UGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 132877 0.7 0.857253
Target:  5'- cCGCGGAgGaaaUCGaCGACGGCGUCc-- -3'
miRNA:   3'- -GCGCCUaCg--AGUaGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 201695 0.7 0.864683
Target:  5'- cCGCGucuGGUGCgggaUCggCGGCGGCGUCGUc -3'
miRNA:   3'- -GCGC---CUACG----AGuaGCUGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 127832 0.7 0.871914
Target:  5'- -cCGGGaGgUCGUCGGCGGCGUCc-- -3'
miRNA:   3'- gcGCCUaCgAGUAGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 177872 0.7 0.871914
Target:  5'- uCGCGGA---UCGUCGACGGCGg---- -3'
miRNA:   3'- -GCGCCUacgAGUAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 170210 0.7 0.871914
Target:  5'- aGCGGGUGCUCcUCG-CGGUGcgCGa- -3'
miRNA:   3'- gCGCCUACGAGuAGCuGCCGCa-GUac -5'
8980 5' -55.1 NC_002512.2 + 170454 0.7 0.871914
Target:  5'- gGCaGAUGCUCA-CGAUGGCG-CAc- -3'
miRNA:   3'- gCGcCUACGAGUaGCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 190680 0.7 0.87475
Target:  5'- uGCGGcuggagcccAUGUUCAcggucaaggccuacgUCGACGGCGUC-UGg -3'
miRNA:   3'- gCGCC---------UACGAGU---------------AGCUGCCGCAGuAC- -5'
8980 5' -55.1 NC_002512.2 + 223628 0.69 0.892368
Target:  5'- uCGCuGGUGCUgcUCGGCGGgcuCGUCAUGc -3'
miRNA:   3'- -GCGcCUACGAguAGCUGCC---GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 215460 0.69 0.898758
Target:  5'- aGCGGG---UCAUCGcCGGCGUCGa- -3'
miRNA:   3'- gCGCCUacgAGUAGCuGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 87195 0.69 0.910293
Target:  5'- cCGCGGuguucgaGUGCUCggUGACGGCccUCGUGc -3'
miRNA:   3'- -GCGCC-------UACGAGuaGCUGCCGc-AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 209287 0.69 0.910877
Target:  5'- aCGUGGAgcgcUGCgUCAaggagaaCGGCGGCGUCAg- -3'
miRNA:   3'- -GCGCCU----ACG-AGUa------GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 191332 0.69 0.910877
Target:  5'- aCGCGGGUGCcgUCcgCGACGGgGg---- -3'
miRNA:   3'- -GCGCCUACG--AGuaGCUGCCgCaguac -5'
8980 5' -55.1 NC_002512.2 + 114228 0.69 0.910877
Target:  5'- gGCGGugAUGUgguccUCAUCGACGGCGaCcgGc -3'
miRNA:   3'- gCGCC--UACG-----AGUAGCUGCCGCaGuaC- -5'
8980 5' -55.1 NC_002512.2 + 195812 0.69 0.910877
Target:  5'- uGCGGGgacaUCGUCGACGccgcCGUCGUGg -3'
miRNA:   3'- gCGCCUacg-AGUAGCUGCc---GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 204825 0.69 0.910877
Target:  5'- gCGCGGcgGCUcCGUccgggaggaCGACGGCGgucgguccUCGUGg -3'
miRNA:   3'- -GCGCCuaCGA-GUA---------GCUGCCGC--------AGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.