miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 196883 1.09 0.005435
Target:  5'- cCGCGGAUGCUCAUCGACGGCGUCAUGg -3'
miRNA:   3'- -GCGCCUACGAGUAGCUGCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 42877 0.78 0.455196
Target:  5'- aGCGGAUGCc---CGACGGCGUgGUGg -3'
miRNA:   3'- gCGCCUACGaguaGCUGCCGCAgUAC- -5'
8980 5' -55.1 NC_002512.2 + 152166 0.76 0.529657
Target:  5'- aGCGGGUaCUCGUgGGCGGCGUCu-- -3'
miRNA:   3'- gCGCCUAcGAGUAgCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 202467 0.76 0.548999
Target:  5'- cCGCGGAcGCUCggCGACGGCGgCGa- -3'
miRNA:   3'- -GCGCCUaCGAGuaGCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 105047 0.75 0.588281
Target:  5'- uCGCGGGccucGCUCggCGACGGCGgCGUGu -3'
miRNA:   3'- -GCGCCUa---CGAGuaGCUGCCGCaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 90678 0.75 0.598192
Target:  5'- cCGCGGcgGC-CAgggccagguccUCGACGGCGUCGg- -3'
miRNA:   3'- -GCGCCuaCGaGU-----------AGCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 226799 0.74 0.657916
Target:  5'- gGCGGAgaagauCUCGUCGGCGGacggGUCGUGg -3'
miRNA:   3'- gCGCCUac----GAGUAGCUGCCg---CAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 45413 0.73 0.707206
Target:  5'- uGCGGgcGCUCGaCGGCGGCGcCGg- -3'
miRNA:   3'- gCGCCuaCGAGUaGCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 100828 0.73 0.707206
Target:  5'- aCGaGGAUGUUCAUCGGCGuGaCGUCAa- -3'
miRNA:   3'- -GCgCCUACGAGUAGCUGC-C-GCAGUac -5'
8980 5' -55.1 NC_002512.2 + 185198 0.73 0.726558
Target:  5'- aCGCGGcgGCg-GUCGACGccgcgguggcccGCGUCGUGg -3'
miRNA:   3'- -GCGCCuaCGagUAGCUGC------------CGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 169063 0.73 0.726558
Target:  5'- gCGCGaGggGCUCcgcggCGGCGGCGUCGc- -3'
miRNA:   3'- -GCGC-CuaCGAGua---GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 154649 0.72 0.745602
Target:  5'- aCGCGGccgcGCUCGUcaccgCGACGGCGUUAa- -3'
miRNA:   3'- -GCGCCua--CGAGUA-----GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 102543 0.72 0.754986
Target:  5'- gGCGGGUcaGCUC-UCGuccGCGGCGUCgAUGg -3'
miRNA:   3'- gCGCCUA--CGAGuAGC---UGCCGCAG-UAC- -5'
8980 5' -55.1 NC_002512.2 + 140926 0.72 0.78249
Target:  5'- aCGCGGcgGCUCGg-GACGGCGaCGa- -3'
miRNA:   3'- -GCGCCuaCGAGUagCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 76691 0.72 0.791413
Target:  5'- cCGCucgucuGAUG-UCGUCGGCGGCGUCAg- -3'
miRNA:   3'- -GCGc-----CUACgAGUAGCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 213076 0.71 0.817333
Target:  5'- cCGCGGGcuacgUGCUCuucGUCGGCGGCGa---- -3'
miRNA:   3'- -GCGCCU-----ACGAG---UAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 220827 0.71 0.820685
Target:  5'- cCGCuGGccGUGCUCGUCGACGGgcugugucgcgucuaCGUCGUc -3'
miRNA:   3'- -GCG-CC--UACGAGUAGCUGCC---------------GCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 155160 0.71 0.825664
Target:  5'- uCGuCGGucucGCUCGcUCG-CGGCGUCGUGa -3'
miRNA:   3'- -GC-GCCua--CGAGU-AGCuGCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 5075 0.71 0.833829
Target:  5'- cCGCGGcguUGgUCGUCGucgcCGGCGUCGg- -3'
miRNA:   3'- -GCGCCu--ACgAGUAGCu---GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 154741 0.7 0.84182
Target:  5'- cCGCGGccGCguc-CGACGGCGUCGc- -3'
miRNA:   3'- -GCGCCuaCGaguaGCUGCCGCAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.