miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 4737 0.66 0.964791
Target:  5'- cCG-GGcAUGCgUCGUCGACGGCGg---- -3'
miRNA:   3'- -GCgCC-UACG-AGUAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 5075 0.71 0.833829
Target:  5'- cCGCGGcguUGgUCGUCGucgcCGGCGUCGg- -3'
miRNA:   3'- -GCGCCu--ACgAGUAGCu---GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 11071 0.66 0.975993
Target:  5'- cCGCGGAggGCgagacggagCGgaCGGCGGUGUCGUc -3'
miRNA:   3'- -GCGCCUa-CGa--------GUa-GCUGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 12808 0.68 0.941833
Target:  5'- uGCGGAUGCUCG--GGCGGCu----- -3'
miRNA:   3'- gCGCCUACGAGUagCUGCCGcaguac -5'
8980 5' -55.1 NC_002512.2 + 17429 0.67 0.954281
Target:  5'- gGCGGAUGCccUCcUCG-CGGCGgUCGc- -3'
miRNA:   3'- gCGCCUACG--AGuAGCuGCCGC-AGUac -5'
8980 5' -55.1 NC_002512.2 + 34044 0.66 0.976235
Target:  5'- gCGcCGGuUGCUCGaggcgugccccacgaCGGCGGCGUCGa- -3'
miRNA:   3'- -GC-GCCuACGAGUa--------------GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 36996 0.66 0.970775
Target:  5'- cCGCGGA-GCg---CGACGGCGcUUAUa -3'
miRNA:   3'- -GCGCCUaCGaguaGCUGCCGC-AGUAc -5'
8980 5' -55.1 NC_002512.2 + 41545 0.66 0.96447
Target:  5'- aCGCGGAaguccgaUGuCUgAUCGuuaaucuCGGCGUCAUc -3'
miRNA:   3'- -GCGCCU-------AC-GAgUAGCu------GCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 42877 0.78 0.455196
Target:  5'- aGCGGAUGCc---CGACGGCGUgGUGg -3'
miRNA:   3'- gCGCCUACGaguaGCUGCCGCAgUAC- -5'
8980 5' -55.1 NC_002512.2 + 45413 0.73 0.707206
Target:  5'- uGCGGgcGCUCGaCGGCGGCGcCGg- -3'
miRNA:   3'- gCGCCuaCGAGUaGCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 58579 0.66 0.970775
Target:  5'- aCGCcGGUGCUCAaC-AUGGCGUCGc- -3'
miRNA:   3'- -GCGcCUACGAGUaGcUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 59833 0.66 0.970775
Target:  5'- gGCGGccGCgg--CGGCGGCGgcCAUGg -3'
miRNA:   3'- gCGCCuaCGaguaGCUGCCGCa-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 76691 0.72 0.791413
Target:  5'- cCGCucgucuGAUG-UCGUCGGCGGCGUCAg- -3'
miRNA:   3'- -GCGc-----CUACgAGUAGCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 78340 0.67 0.950352
Target:  5'- cCGCGGAagGUUCGUCaGuCGGCGUUc-- -3'
miRNA:   3'- -GCGCCUa-CGAGUAG-CuGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 80417 0.68 0.93242
Target:  5'- gGUGGcgugGCU-GUCGGCGGCGUCccGg -3'
miRNA:   3'- gCGCCua--CGAgUAGCUGCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 80676 0.68 0.93242
Target:  5'- cCGCGGcgGCggcgaCGggggCGAgCGGCGUCcgGg -3'
miRNA:   3'- -GCGCCuaCGa----GUa---GCU-GCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 81607 0.66 0.967882
Target:  5'- aGCuGaGGUGCUCGUCGGCcagGGcCGUCGc- -3'
miRNA:   3'- gCG-C-CUACGAGUAGCUG---CC-GCAGUac -5'
8980 5' -55.1 NC_002512.2 + 84040 0.67 0.961497
Target:  5'- gGCaGGUGCUCGUUGAagaucucgUGGCG-CGUGc -3'
miRNA:   3'- gCGcCUACGAGUAGCU--------GCCGCaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 87195 0.69 0.910293
Target:  5'- cCGCGGuguucgaGUGCUCggUGACGGCccUCGUGc -3'
miRNA:   3'- -GCGCC-------UACGAGuaGCUGCCGc-AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 89415 0.7 0.84963
Target:  5'- gCGCGGAaccagGCcucgggCGUCGGCGGgGUCAc- -3'
miRNA:   3'- -GCGCCUa----CGa-----GUAGCUGCCgCAGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.