miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 226799 0.74 0.657916
Target:  5'- gGCGGAgaagauCUCGUCGGCGGacggGUCGUGg -3'
miRNA:   3'- gCGCCUac----GAGUAGCUGCCg---CAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 226581 0.68 0.922101
Target:  5'- gGCGGAUgGCgaggaggCAUCGugGGCGg---- -3'
miRNA:   3'- gCGCCUA-CGa------GUAGCugCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 223628 0.69 0.892368
Target:  5'- uCGCuGGUGCUgcUCGGCGGgcuCGUCAUGc -3'
miRNA:   3'- -GCGcCUACGAguAGCUGCC---GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 221746 0.66 0.970775
Target:  5'- gGCGGAcGCgcCGUCGaacggcagcuggGCGGCcGUCGUGu -3'
miRNA:   3'- gCGCCUaCGa-GUAGC------------UGCCG-CAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 220827 0.71 0.820685
Target:  5'- cCGCuGGccGUGCUCGUCGACGGgcugugucgcgucuaCGUCGUc -3'
miRNA:   3'- -GCG-CC--UACGAGUAGCUGCC---------------GCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 220080 0.66 0.969063
Target:  5'- gCGCGGAUcCUCAccuccuucgaggaggUCGA-GGCGUcCGUGa -3'
miRNA:   3'- -GCGCCUAcGAGU---------------AGCUgCCGCA-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 217893 0.66 0.973477
Target:  5'- gGCGGccGCgUCGUCGAgCGGCGg---- -3'
miRNA:   3'- gCGCCuaCG-AGUAGCU-GCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 217801 0.68 0.921561
Target:  5'- gGCGGAUcgGCgucgccgucccgaUCGUCGACGGCGggCGg- -3'
miRNA:   3'- gCGCCUA--CG-------------AGUAGCUGCCGCa-GUac -5'
8980 5' -55.1 NC_002512.2 + 215460 0.69 0.898758
Target:  5'- aGCGGG---UCAUCGcCGGCGUCGa- -3'
miRNA:   3'- gCGCCUacgAGUAGCuGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 215049 0.68 0.916602
Target:  5'- cCGaGGA-GCUCAccgucgUCGGCGGCGUCu-- -3'
miRNA:   3'- -GCgCCUaCGAGU------AGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 213076 0.71 0.817333
Target:  5'- cCGCGGGcuacgUGCUCuucGUCGGCGGCGa---- -3'
miRNA:   3'- -GCGCCU-----ACGAG---UAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 209896 0.67 0.950352
Target:  5'- uCGCGGGgagcagggGCUCAUCGuCGucugcaaCGUCAUGc -3'
miRNA:   3'- -GCGCCUa-------CGAGUAGCuGCc------GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 209287 0.69 0.910877
Target:  5'- aCGUGGAgcgcUGCgUCAaggagaaCGGCGGCGUCAg- -3'
miRNA:   3'- -GCGCCU----ACG-AGUa------GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 204825 0.69 0.910877
Target:  5'- gCGCGGcgGCUcCGUccgggaggaCGACGGCGgucgguccUCGUGg -3'
miRNA:   3'- -GCGCCuaCGA-GUA---------GCUGCCGC--------AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 203375 0.67 0.950352
Target:  5'- cCGCGGuUGCUCAgcaucaggaaCGGCaGCGUCGc- -3'
miRNA:   3'- -GCGCCuACGAGUa---------GCUGcCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 202467 0.76 0.548999
Target:  5'- cCGCGGAcGCUCggCGACGGCGgCGa- -3'
miRNA:   3'- -GCGCCUaCGAGuaGCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 201695 0.7 0.864683
Target:  5'- cCGCGucuGGUGCgggaUCggCGGCGGCGUCGUc -3'
miRNA:   3'- -GCGC---CUACG----AGuaGCUGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 196883 1.09 0.005435
Target:  5'- cCGCGGAUGCUCAUCGACGGCGUCAUGg -3'
miRNA:   3'- -GCGCCUACGAGUAGCUGCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 195812 0.69 0.910877
Target:  5'- uGCGGGgacaUCGUCGACGccgcCGUCGUGg -3'
miRNA:   3'- gCGCCUacg-AGUAGCUGCc---GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 191332 0.69 0.910877
Target:  5'- aCGCGGGUGCcgUCcgCGACGGgGg---- -3'
miRNA:   3'- -GCGCCUACG--AGuaGCUGCCgCaguac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.