miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 91630 0.67 0.946204
Target:  5'- cCGCGGGgauCUCcagCGGguuCGGCGUCGUGu -3'
miRNA:   3'- -GCGCCUac-GAGua-GCU---GCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 116896 0.68 0.927374
Target:  5'- gGCGGGgccggggcggGCUCcUCgGACGGCGUCc-- -3'
miRNA:   3'- gCGCCUa---------CGAGuAG-CUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 80417 0.68 0.93242
Target:  5'- gGUGGcgugGCU-GUCGGCGGCGUCccGg -3'
miRNA:   3'- gCGCCua--CGAgUAGCUGCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 103467 0.68 0.93242
Target:  5'- gGCGGGaggaggagagGCggCGUCGACGGCGcCcgGg -3'
miRNA:   3'- gCGCCUa---------CGa-GUAGCUGCCGCaGuaC- -5'
8980 5' -55.1 NC_002512.2 + 80676 0.68 0.93242
Target:  5'- cCGCGGcgGCggcgaCGggggCGAgCGGCGUCcgGg -3'
miRNA:   3'- -GCGCCuaCGa----GUa---GCU-GCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 136354 0.68 0.936767
Target:  5'- uCGCGGGUcggucGCUCGUUGAUGGCcagcgacacgcacGcCAUGg -3'
miRNA:   3'- -GCGCCUA-----CGAGUAGCUGCCG-------------CaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 91916 0.68 0.941384
Target:  5'- gGCGGcgGCgcgcCGUCGGCGGCcgacuugGUCuUGg -3'
miRNA:   3'- gCGCCuaCGa---GUAGCUGCCG-------CAGuAC- -5'
8980 5' -55.1 NC_002512.2 + 12808 0.68 0.941833
Target:  5'- uGCGGAUGCUCG--GGCGGCu----- -3'
miRNA:   3'- gCGCCUACGAGUagCUGCCGcaguac -5'
8980 5' -55.1 NC_002512.2 + 167737 0.67 0.946204
Target:  5'- uGUGGGUGCUgAUggcggaUGGCGGUGUCccGg -3'
miRNA:   3'- gCGCCUACGAgUA------GCUGCCGCAGuaC- -5'
8980 5' -55.1 NC_002512.2 + 226581 0.68 0.922101
Target:  5'- gGCGGAUgGCgaggaggCAUCGugGGCGg---- -3'
miRNA:   3'- gCGCCUA-CGa------GUAGCugCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 129384 0.69 0.910878
Target:  5'- uGCGGGUGCUCGaCGACcGCGg---- -3'
miRNA:   3'- gCGCCUACGAGUaGCUGcCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 87195 0.69 0.910293
Target:  5'- cCGCGGuguucgaGUGCUCggUGACGGCccUCGUGc -3'
miRNA:   3'- -GCGCC-------UACGAGuaGCUGCCGc-AGUAC- -5'
8980 5' -55.1 NC_002512.2 + 105047 0.75 0.588281
Target:  5'- uCGCGGGccucGCUCggCGACGGCGgCGUGu -3'
miRNA:   3'- -GCGCCUa---CGAGuaGCUGCCGCaGUAC- -5'
8980 5' -55.1 NC_002512.2 + 226799 0.74 0.657916
Target:  5'- gGCGGAgaagauCUCGUCGGCGGacggGUCGUGg -3'
miRNA:   3'- gCGCCUac----GAGUAGCUGCCg---CAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 45413 0.73 0.707206
Target:  5'- uGCGGgcGCUCGaCGGCGGCGcCGg- -3'
miRNA:   3'- gCGCCuaCGAGUaGCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 154649 0.72 0.745602
Target:  5'- aCGCGGccgcGCUCGUcaccgCGACGGCGUUAa- -3'
miRNA:   3'- -GCGCCua--CGAGUA-----GCUGCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 140926 0.72 0.78249
Target:  5'- aCGCGGcgGCUCGg-GACGGCGaCGa- -3'
miRNA:   3'- -GCGCCuaCGAGUagCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 5075 0.71 0.833829
Target:  5'- cCGCGGcguUGgUCGUCGucgcCGGCGUCGg- -3'
miRNA:   3'- -GCGCCu--ACgAGUAGCu---GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 130552 0.7 0.84963
Target:  5'- -cCGGAUGCUCGUCGAgGaguuCGUCGUa -3'
miRNA:   3'- gcGCCUACGAGUAGCUgCc---GCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 108983 0.7 0.857253
Target:  5'- aGCaGGGccguguaccUGCUCGUCGgcgccgGCGGCGUCGUc -3'
miRNA:   3'- gCG-CCU---------ACGAGUAGC------UGCCGCAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.