miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8980 5' -55.1 NC_002512.2 + 132527 0.66 0.975993
Target:  5'- cCGCGGuccccGCUCcgCgGGCGGCGcCGUc -3'
miRNA:   3'- -GCGCCua---CGAGuaG-CUGCCGCaGUAc -5'
8980 5' -55.1 NC_002512.2 + 171782 0.68 0.922101
Target:  5'- uCGCGGAggugGCUCAccucguccCGACGGCG-CGc- -3'
miRNA:   3'- -GCGCCUa---CGAGUa-------GCUGCCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 189637 0.68 0.921561
Target:  5'- uCGCGGucgGCuUCGUCGGgacgcgccgacacCGGCGUCGg- -3'
miRNA:   3'- -GCGCCua-CG-AGUAGCU-------------GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 196883 1.09 0.005435
Target:  5'- cCGCGGAUGCUCAUCGACGGCGUCAUGg -3'
miRNA:   3'- -GCGCCUACGAGUAGCUGCCGCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 220080 0.66 0.969063
Target:  5'- gCGCGGAUcCUCAccuccuucgaggaggUCGA-GGCGUcCGUGa -3'
miRNA:   3'- -GCGCCUAcGAGU---------------AGCUgCCGCA-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 4737 0.66 0.964791
Target:  5'- cCG-GGcAUGCgUCGUCGACGGCGg---- -3'
miRNA:   3'- -GCgCC-UACG-AGUAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 96817 0.67 0.961496
Target:  5'- aCGUGGAcGCU-GUCGauccuaugcugcGCGGCGUCGUu -3'
miRNA:   3'- -GCGCCUaCGAgUAGC------------UGCCGCAGUAc -5'
8980 5' -55.1 NC_002512.2 + 189070 0.67 0.961496
Target:  5'- gGCGGc-GCUC-UCGACGGCGa---- -3'
miRNA:   3'- gCGCCuaCGAGuAGCUGCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 156048 0.67 0.95195
Target:  5'- uGCGGGUcgucgacacggcgagGCUCAUCGACgccgGGCGcCGg- -3'
miRNA:   3'- gCGCCUA---------------CGAGUAGCUG----CCGCaGUac -5'
8980 5' -55.1 NC_002512.2 + 103457 0.68 0.937239
Target:  5'- gCGCGGGUccgaggacgcgGCUCGggucUCGGCGGCGgccgCGg- -3'
miRNA:   3'- -GCGCCUA-----------CGAGU----AGCUGCCGCa---GUac -5'
8980 5' -55.1 NC_002512.2 + 78340 0.67 0.950352
Target:  5'- cCGCGGAagGUUCGUCaGuCGGCGUUc-- -3'
miRNA:   3'- -GCGCCUa-CGAGUAG-CuGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 117118 0.67 0.954281
Target:  5'- aGCGGcacgggGCccCGUCGGCGGCGUUc-- -3'
miRNA:   3'- gCGCCua----CGa-GUAGCUGCCGCAGuac -5'
8980 5' -55.1 NC_002512.2 + 96144 0.66 0.975993
Target:  5'- uCGCGGgcGCUCuccucgucGUCGcuguCGGUGUCGa- -3'
miRNA:   3'- -GCGCCuaCGAG--------UAGCu---GCCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 209896 0.67 0.950352
Target:  5'- uCGCGGGgagcagggGCUCAUCGuCGucugcaaCGUCAUGc -3'
miRNA:   3'- -GCGCCUa-------CGAGUAGCuGCc------GCAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 217893 0.66 0.973477
Target:  5'- gGCGGccGCgUCGUCGAgCGGCGg---- -3'
miRNA:   3'- gCGCCuaCG-AGUAGCU-GCCGCaguac -5'
8980 5' -55.1 NC_002512.2 + 144556 0.67 0.959421
Target:  5'- gCGCGGAaGCUCcaaccggcgaccuacGUCGAgcggcaGGCGUCGa- -3'
miRNA:   3'- -GCGCCUaCGAG---------------UAGCUg-----CCGCAGUac -5'
8980 5' -55.1 NC_002512.2 + 124308 0.67 0.946203
Target:  5'- gCGCGGA-GCUgAUCGgggccGCGGCGgaCGUGc -3'
miRNA:   3'- -GCGCCUaCGAgUAGC-----UGCCGCa-GUAC- -5'
8980 5' -55.1 NC_002512.2 + 217801 0.68 0.921561
Target:  5'- gGCGGAUcgGCgucgccgucccgaUCGUCGACGGCGggCGg- -3'
miRNA:   3'- gCGCCUA--CG-------------AGUAGCUGCCGCa-GUac -5'
8980 5' -55.1 NC_002512.2 + 221746 0.66 0.970775
Target:  5'- gGCGGAcGCgcCGUCGaacggcagcuggGCGGCcGUCGUGu -3'
miRNA:   3'- gCGCCUaCGa-GUAGC------------UGCCG-CAGUAC- -5'
8980 5' -55.1 NC_002512.2 + 41545 0.66 0.96447
Target:  5'- aCGCGGAaguccgaUGuCUgAUCGuuaaucuCGGCGUCAUc -3'
miRNA:   3'- -GCGCCU-------AC-GAgUAGCu------GCCGCAGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.