miRNA display CGI


Results 41 - 60 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 193932 0.66 0.589246
Target:  5'- aCUCCGCUgacgGCCGgGGaaCGUCGUcuggCGCGa -3'
miRNA:   3'- gGAGGCGG----CGGCgCCg-GCAGCG----GCGC- -5'
8981 5' -66.7 NC_002512.2 + 157350 0.66 0.589246
Target:  5'- gUUCCGCCugGCCGCcgaGGuCCGggcCGCCGgGc -3'
miRNA:   3'- gGAGGCGG--CGGCG---CC-GGCa--GCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 224788 0.66 0.589246
Target:  5'- gUCUCUcCCGCC-CGcGCCGaCGCCgGCGa -3'
miRNA:   3'- -GGAGGcGGCGGcGC-CGGCaGCGG-CGC- -5'
8981 5' -66.7 NC_002512.2 + 117872 0.66 0.589246
Target:  5'- uUCggCCGCaagacggaCGCCGgGGgcCCGUCGCUGCu -3'
miRNA:   3'- -GGa-GGCG--------GCGGCgCC--GGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 201711 0.66 0.589246
Target:  5'- -aUCgGCgGCgGC-GUCGUCGUCGCGg -3'
miRNA:   3'- ggAGgCGgCGgCGcCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 172940 0.66 0.589246
Target:  5'- aCCUUCGCCGCCuCGGUgGU-GCUcCGg -3'
miRNA:   3'- -GGAGGCGGCGGcGCCGgCAgCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 195805 0.66 0.589246
Target:  5'- gCUCCGCUGCgGgGacaucgucgacGCCGcCGUCGUGg -3'
miRNA:   3'- gGAGGCGGCGgCgC-----------CGGCaGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 196230 0.66 0.589246
Target:  5'- gCCUCUGagacccuguCCGCCGCGcCCG-CGCgCGCc -3'
miRNA:   3'- -GGAGGC---------GGCGGCGCcGGCaGCG-GCGc -5'
8981 5' -66.7 NC_002512.2 + 164247 0.66 0.589246
Target:  5'- -gUUCGgCGCCGUGGCgGggGCCGuCGg -3'
miRNA:   3'- ggAGGCgGCGGCGCCGgCagCGGC-GC- -5'
8981 5' -66.7 NC_002512.2 + 101755 0.66 0.588338
Target:  5'- aCCagCCGCCGCCugaccuucgGCGagacggcGCCGUCcUCGCGg -3'
miRNA:   3'- -GGa-GGCGGCGG---------CGC-------CGGCAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 9372 0.66 0.586524
Target:  5'- uCCUCCaggucccgggcgacGCagGCCaCGGCC-UCGCUGCGg -3'
miRNA:   3'- -GGAGG--------------CGg-CGGcGCCGGcAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 187304 0.66 0.580183
Target:  5'- -gUCCGCCccGCCGCucGCC-UCGCgGCGc -3'
miRNA:   3'- ggAGGCGG--CGGCGc-CGGcAGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 128232 0.66 0.580183
Target:  5'- --cCCGgCGuCCGCGGCCGcCG-CGCu -3'
miRNA:   3'- ggaGGCgGC-GGCGCCGGCaGCgGCGc -5'
8981 5' -66.7 NC_002512.2 + 134580 0.66 0.580183
Target:  5'- --cCCGCCGCUGCuucGGCgccuCGUCcGCCGaCGg -3'
miRNA:   3'- ggaGGCGGCGGCG---CCG----GCAG-CGGC-GC- -5'
8981 5' -66.7 NC_002512.2 + 49226 0.66 0.580183
Target:  5'- aUCUUCGgggccaCCGCgGCGGCC--UGCCGCa -3'
miRNA:   3'- -GGAGGC------GGCGgCGCCGGcaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 192897 0.66 0.580183
Target:  5'- --gCCGUCGCgcucCGCGGCgGUCcagaGCCGCc -3'
miRNA:   3'- ggaGGCGGCG----GCGCCGgCAG----CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 151561 0.66 0.580183
Target:  5'- cCUUCCGCgGUC-CGGaCgGUCGCuCGCa -3'
miRNA:   3'- -GGAGGCGgCGGcGCC-GgCAGCG-GCGc -5'
8981 5' -66.7 NC_002512.2 + 116969 0.66 0.580183
Target:  5'- aCCgggCCGCCGaCGCcccguccgggcgGGCCGaCGgCCGCa -3'
miRNA:   3'- -GGa--GGCGGCgGCG------------CCGGCaGC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 27959 0.66 0.580183
Target:  5'- cCCgggcCCGUCGCCgauggGCGGCCGggcgagauucCGgCGCGg -3'
miRNA:   3'- -GGa---GGCGGCGG-----CGCCGGCa---------GCgGCGC- -5'
8981 5' -66.7 NC_002512.2 + 3690 0.66 0.580183
Target:  5'- cCCggCCGCgCGCuaacggCGCGGCCGUCuCUGUc -3'
miRNA:   3'- -GGa-GGCG-GCG------GCGCCGGCAGcGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.