miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 172893 0.66 0.598333
Target:  5'- aCC-CgGCCGCCcaCGGCUGUCccCCGUGg -3'
miRNA:   3'- -GGaGgCGGCGGc-GCCGGCAGc-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 96137 0.66 0.598333
Target:  5'- --gUCGUCGUCGCGGgcgcucuccUCGUCGUCGCu -3'
miRNA:   3'- ggaGGCGGCGGCGCC---------GGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 126764 0.66 0.598333
Target:  5'- gCCUCggggCGCgGCgGCGGCgGcgacgcgUGCCGCGc -3'
miRNA:   3'- -GGAG----GCGgCGgCGCCGgCa------GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 183497 0.66 0.598333
Target:  5'- --gCCGCCuacgGCCGCgagggggaGGCCGUCcucgccugGCUGCGg -3'
miRNA:   3'- ggaGGCGG----CGGCG--------CCGGCAG--------CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 185713 0.66 0.597424
Target:  5'- aCCaCCGCCGCUucgauaccaagcuGCGcGUCGUCGUCGa- -3'
miRNA:   3'- -GGaGGCGGCGG-------------CGC-CGGCAGCGGCgc -5'
8981 5' -66.7 NC_002512.2 + 141901 0.66 0.597424
Target:  5'- aUCUCCGCgucggggCGCCGCGGCCc-CGaCGgGg -3'
miRNA:   3'- -GGAGGCG-------GCGGCGCCGGcaGCgGCgC- -5'
8981 5' -66.7 NC_002512.2 + 75149 0.66 0.597424
Target:  5'- gCCgucggaCGCgGCCGCGGacgcaacgccguuCCGUCgcGCCGCu -3'
miRNA:   3'- -GGag----GCGgCGGCGCC-------------GGCAG--CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 215538 0.66 0.589246
Target:  5'- cCCUCCGggagaUC-CUGCuGGCCGUCGgCGCc -3'
miRNA:   3'- -GGAGGC-----GGcGGCG-CCGGCAGCgGCGc -5'
8981 5' -66.7 NC_002512.2 + 135750 0.66 0.589246
Target:  5'- gCCUCCGCCGCgucaucCGCGuCC-UgGCCGaCGa -3'
miRNA:   3'- -GGAGGCGGCG------GCGCcGGcAgCGGC-GC- -5'
8981 5' -66.7 NC_002512.2 + 201711 0.66 0.589246
Target:  5'- -aUCgGCgGCgGC-GUCGUCGUCGCGg -3'
miRNA:   3'- ggAGgCGgCGgCGcCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 172940 0.66 0.589246
Target:  5'- aCCUUCGCCGCCuCGGUgGU-GCUcCGg -3'
miRNA:   3'- -GGAGGCGGCGGcGCCGgCAgCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 183162 0.66 0.589246
Target:  5'- uCC-CCGCCGCCGCcGCCaugacGUaCGCCa-- -3'
miRNA:   3'- -GGaGGCGGCGGCGcCGG-----CA-GCGGcgc -5'
8981 5' -66.7 NC_002512.2 + 94824 0.66 0.589246
Target:  5'- gCCgUCCcggaGCCGCCGgaGGaagagCGUgGCCGCGg -3'
miRNA:   3'- -GG-AGG----CGGCGGCg-CCg----GCAgCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 12392 0.66 0.589246
Target:  5'- gCCUUCggGCgGCgGCGGCgG-CGCCGgGa -3'
miRNA:   3'- -GGAGG--CGgCGgCGCCGgCaGCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 33400 0.66 0.589246
Target:  5'- gCgUCCGCCaGCCagGCGuaguaGCCGgagaugUCGCCGCa -3'
miRNA:   3'- -GgAGGCGG-CGG--CGC-----CGGC------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 12056 0.66 0.589246
Target:  5'- gCCUCUGCCGaaCCGCccGCCGUCGaCGa- -3'
miRNA:   3'- -GGAGGCGGC--GGCGc-CGGCAGCgGCgc -5'
8981 5' -66.7 NC_002512.2 + 100493 0.66 0.589246
Target:  5'- aCCUUgGggagGCCGCGGUCGUCGagcacCCGCa -3'
miRNA:   3'- -GGAGgCgg--CGGCGCCGGCAGC-----GGCGc -5'
8981 5' -66.7 NC_002512.2 + 157350 0.66 0.589246
Target:  5'- gUUCCGCCugGCCGCcgaGGuCCGggcCGCCGgGc -3'
miRNA:   3'- gGAGGCGG--CGGCG---CC-GGCa--GCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 117872 0.66 0.589246
Target:  5'- uUCggCCGCaagacggaCGCCGgGGgcCCGUCGCUGCu -3'
miRNA:   3'- -GGa-GGCG--------GCGGCgCC--GGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 1616 0.66 0.589246
Target:  5'- cUCUCCcacCCGguCCGCGGUCaGUCGCCcccGCGu -3'
miRNA:   3'- -GGAGGc--GGC--GGCGCCGG-CAGCGG---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.