miRNA display CGI


Results 21 - 40 of 551 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 45555 0.66 0.57115
Target:  5'- aCCUCUucuuGCCGUCGC-GCaCGUCGCaGCu -3'
miRNA:   3'- -GGAGG----CGGCGGCGcCG-GCAGCGgCGc -5'
8981 5' -66.7 NC_002512.2 + 109090 0.66 0.57115
Target:  5'- -gUCCGUCGacaCCGUGGCCGUcagCGCCagGCu -3'
miRNA:   3'- ggAGGCGGC---GGCGCCGGCA---GCGG--CGc -5'
8981 5' -66.7 NC_002512.2 + 122259 0.66 0.604707
Target:  5'- uCUUCCccgGCgGCCGCGGggacguccuggagcCCGUCagcgaGCCGCa -3'
miRNA:   3'- -GGAGG---CGgCGGCGCC--------------GGCAG-----CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 63405 0.66 0.562151
Target:  5'- uCCUCCGacCCGCgGUcccGCCGUCcCCGCc -3'
miRNA:   3'- -GGAGGC--GGCGgCGc--CGGCAGcGGCGc -5'
8981 5' -66.7 NC_002512.2 + 5243 0.66 0.57115
Target:  5'- aCUCgGgCGCguaGGCCGagGCCGCGg -3'
miRNA:   3'- gGAGgCgGCGgcgCCGGCagCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 55483 0.66 0.598333
Target:  5'- gCC-CCGgCGCCGCGGgaaCG-CGCCaCGg -3'
miRNA:   3'- -GGaGGCgGCGGCGCCg--GCaGCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 121681 0.66 0.574759
Target:  5'- --gUCGCCGCCgagugcauaggagacGUGGCCGcccugaaCGCCGCa -3'
miRNA:   3'- ggaGGCGGCGG---------------CGCCGGCa------GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 33400 0.66 0.589246
Target:  5'- gCgUCCGCCaGCCagGCGuaguaGCCGgagaugUCGCCGCa -3'
miRNA:   3'- -GgAGGCGG-CGG--CGC-----CGGC------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 108484 0.66 0.599243
Target:  5'- cCCUCCacgccaggcgcggcuCCGUC-CGGCCGUCGCCc-- -3'
miRNA:   3'- -GGAGGc--------------GGCGGcGCCGGCAGCGGcgc -5'
8981 5' -66.7 NC_002512.2 + 49226 0.66 0.580183
Target:  5'- aUCUUCGgggccaCCGCgGCGGCC--UGCCGCa -3'
miRNA:   3'- -GGAGGC------GGCGgCGCCGGcaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 1115 0.66 0.562151
Target:  5'- gUCUCCGCCGUCuCGGUCGcCuccuCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGcGCCGGCaGc---GGCGc -5'
8981 5' -66.7 NC_002512.2 + 81356 0.66 0.57115
Target:  5'- gCCUCCcucGCgGCCGgGGCgGgcggCGgCCGCc -3'
miRNA:   3'- -GGAGG---CGgCGGCgCCGgCa---GC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 131085 0.66 0.57115
Target:  5'- gCUCCgGCCGCCGgGGUaccuggacgUGgugCGCCGgGc -3'
miRNA:   3'- gGAGG-CGGCGGCgCCG---------GCa--GCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 63666 0.66 0.562151
Target:  5'- aCUUCCccaCgCGCgCGCGGCCcuccUCGCCGCc -3'
miRNA:   3'- -GGAGGc--G-GCG-GCGCCGGc---AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 12056 0.66 0.589246
Target:  5'- gCCUCUGCCGaaCCGCccGCCGUCGaCGa- -3'
miRNA:   3'- -GGAGGCGGC--GGCGc-CGGCAGCgGCgc -5'
8981 5' -66.7 NC_002512.2 + 141901 0.66 0.597424
Target:  5'- aUCUCCGCgucggggCGCCGCGGCCc-CGaCGgGg -3'
miRNA:   3'- -GGAGGCG-------GCGGCGCCGGcaGCgGCgC- -5'
8981 5' -66.7 NC_002512.2 + 27959 0.66 0.580183
Target:  5'- cCCgggcCCGUCGCCgauggGCGGCCGggcgagauucCGgCGCGg -3'
miRNA:   3'- -GGa---GGCGGCGG-----CGCCGGCa---------GCgGCGC- -5'
8981 5' -66.7 NC_002512.2 + 186417 0.66 0.562151
Target:  5'- aCCUgUGaCGCCGCGaGCagaaaCGCCGCGa -3'
miRNA:   3'- -GGAgGCgGCGGCGC-CGgca--GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 30237 0.66 0.598333
Target:  5'- cCCUCCuCCGuCCGCGGgaaacggGUCcCCGCGg -3'
miRNA:   3'- -GGAGGcGGC-GGCGCCgg-----CAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 33463 0.66 0.57115
Target:  5'- aCCUCUcCCGaCC-CGGCCGcCGCCccccGCGu -3'
miRNA:   3'- -GGAGGcGGC-GGcGCCGGCaGCGG----CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.