miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 5243 0.66 0.57115
Target:  5'- aCUCgGgCGCguaGGCCGagGCCGCGg -3'
miRNA:   3'- gGAGgCgGCGgcgCCGGCagCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 5809 0.66 0.589246
Target:  5'- --aCCGCCGCCGCc-CCGUUcgGCgGCGu -3'
miRNA:   3'- ggaGGCGGCGGCGccGGCAG--CGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 5963 0.71 0.337696
Target:  5'- aCCUCC-CCGUC-CGGCuCGaccucUCGCCGCGc -3'
miRNA:   3'- -GGAGGcGGCGGcGCCG-GC-----AGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 6064 0.76 0.151588
Target:  5'- cCCUCCGaCgCGCCGUcgucgucccGGCgGUCGCCGCc -3'
miRNA:   3'- -GGAGGC-G-GCGGCG---------CCGgCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 6354 0.69 0.395036
Target:  5'- gCCggcgggCCGCgGgCGCGuGCCGUucucCGCCGUGg -3'
miRNA:   3'- -GGa-----GGCGgCgGCGC-CGGCA----GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 7233 0.76 0.144803
Target:  5'- cCCUCgGCC-CgGcCGGCCGUCGCgGCGg -3'
miRNA:   3'- -GGAGgCGGcGgC-GCCGGCAGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 7310 0.72 0.28072
Target:  5'- uCCUCCGCgacggcggGCCGCGGCgGgacggucgggUCGCCGUa -3'
miRNA:   3'- -GGAGGCGg-------CGGCGCCGgC----------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 7826 0.66 0.598333
Target:  5'- uCCUCUGCgcauccgaCGCCGCGaGCaUGUCGCucuuCGUGa -3'
miRNA:   3'- -GGAGGCG--------GCGGCGC-CG-GCAGCG----GCGC- -5'
8981 5' -66.7 NC_002512.2 + 8454 0.67 0.517822
Target:  5'- cCCggCCGCgGUCcgcaugGCGGCCGUcggacagaccCGCCGCc -3'
miRNA:   3'- -GGa-GGCGgCGG------CGCCGGCA----------GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 8642 0.71 0.29882
Target:  5'- aCUUCCGCCGCgGcCGGCCGaUCgaccucaaGCCGUu -3'
miRNA:   3'- -GGAGGCGGCGgC-GCCGGC-AG--------CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 8820 0.67 0.544273
Target:  5'- gUUCCGCCGCCGgagcuugGGCCagacgggcUCGCUGCc -3'
miRNA:   3'- gGAGGCGGCGGCg------CCGGc-------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 9372 0.66 0.586524
Target:  5'- uCCUCCaggucccgggcgacGCagGCCaCGGCC-UCGCUGCGg -3'
miRNA:   3'- -GGAGG--------------CGg-CGGcGCCGGcAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 10467 0.76 0.16603
Target:  5'- gCCgCCGCCGCCccgggcGUGGgCGUCGCgGCGg -3'
miRNA:   3'- -GGaGGCGGCGG------CGCCgGCAGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 10844 0.68 0.441969
Target:  5'- gCC-CCG-CGCCGCGGCCGaCGaCGUa -3'
miRNA:   3'- -GGaGGCgGCGGCGCCGGCaGCgGCGc -5'
8981 5' -66.7 NC_002512.2 + 11663 0.74 0.203103
Target:  5'- --aUCGgCGCCGCGGCC--CGCCGCGg -3'
miRNA:   3'- ggaGGCgGCGGCGCCGGcaGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 11992 0.67 0.53452
Target:  5'- --aCCGCCGCucgacgaCGCGGCCGcCGaucucggaCGCGc -3'
miRNA:   3'- ggaGGCGGCG-------GCGCCGGCaGCg-------GCGC- -5'
8981 5' -66.7 NC_002512.2 + 12056 0.66 0.589246
Target:  5'- gCCUCUGCCGaaCCGCccGCCGUCGaCGa- -3'
miRNA:   3'- -GGAGGCGGC--GGCGc-CGGCAGCgGCgc -5'
8981 5' -66.7 NC_002512.2 + 12309 0.68 0.441969
Target:  5'- gCggCGCCGCCGgacCGGCuCGcCGUCGCGa -3'
miRNA:   3'- gGagGCGGCGGC---GCCG-GCaGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 12392 0.66 0.589246
Target:  5'- gCCUUCggGCgGCgGCGGCgG-CGCCGgGa -3'
miRNA:   3'- -GGAGG--CGgCGgCGCCGgCaGCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 13556 0.67 0.535404
Target:  5'- aUCgagCCGCCGaCCGC-GUCGggGCCGCa -3'
miRNA:   3'- -GGa--GGCGGC-GGCGcCGGCagCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.