miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 1149 0.79 0.104601
Target:  5'- aUCUCCGCCGuCCGCGuCCGUCuCCGCa -3'
miRNA:   3'- -GGAGGCGGC-GGCGCcGGCAGcGGCGc -5'
8981 5' -66.7 NC_002512.2 + 98148 0.78 0.107086
Target:  5'- --gCCGcCCGCCcCGGCgGUCGCCGCGg -3'
miRNA:   3'- ggaGGC-GGCGGcGCCGgCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 93777 0.78 0.109625
Target:  5'- cCCUccCCGUCGCUGUGGCCGcCGCCaGCGc -3'
miRNA:   3'- -GGA--GGCGGCGGCGCCGGCaGCGG-CGC- -5'
8981 5' -66.7 NC_002512.2 + 220358 0.78 0.112221
Target:  5'- aCgCCGUgGCCGUGGCCGcCGCCGCc -3'
miRNA:   3'- gGaGGCGgCGGCGCCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 96105 0.78 0.112221
Target:  5'- uCC-CCGCCGCCGCcGUCGUCGUCGUc -3'
miRNA:   3'- -GGaGGCGGCGGCGcCGGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 192720 0.78 0.112221
Target:  5'- uUCUCCGCCGCCGUcguGGCCuUCGUCGUc -3'
miRNA:   3'- -GGAGGCGGCGGCG---CCGGcAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 75576 0.78 0.112221
Target:  5'- gCCgCCGCCGUCGCGGUCGaCGUgGCGg -3'
miRNA:   3'- -GGaGGCGGCGGCGCCGGCaGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 149216 0.78 0.112221
Target:  5'- cCCgucgCCGCCGCCGCGGgaccgacggacCCGgCGCCGCc -3'
miRNA:   3'- -GGa---GGCGGCGGCGCC-----------GGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 224719 0.78 0.114874
Target:  5'- gCCggCCGCCGCCcCGGUCG-CGCCGCu -3'
miRNA:   3'- -GGa-GGCGGCGGcGCCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 216203 0.78 0.117586
Target:  5'- -aUCa-CCGCCGCGGCCGUCGCCuCGu -3'
miRNA:   3'- ggAGgcGGCGGCGCCGGCAGCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 90614 0.78 0.120637
Target:  5'- cCCUUCGCCcCCGCGcGCCGggcggcgcgacccggCGCCGCGg -3'
miRNA:   3'- -GGAGGCGGcGGCGC-CGGCa--------------GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 126639 0.77 0.123189
Target:  5'- uCCUCCauGCCcucGCCGCGGCCGUCGacgggcggcgaCGCGa -3'
miRNA:   3'- -GGAGG--CGG---CGGCGCCGGCAGCg----------GCGC- -5'
8981 5' -66.7 NC_002512.2 + 123119 0.77 0.123189
Target:  5'- cCCgCCGCCGUCgGCGGCCGUC-CCGgGg -3'
miRNA:   3'- -GGaGGCGGCGG-CGCCGGCAGcGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 204954 0.77 0.129039
Target:  5'- uCCUCgGUCGCUGCgGGCCGagcccgaCGCCGCGg -3'
miRNA:   3'- -GGAGgCGGCGGCG-CCGGCa------GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 181405 0.77 0.129039
Target:  5'- gCCUCCGCCGgggaCGCguucaggauGGCCGUCaGCUGCGg -3'
miRNA:   3'- -GGAGGCGGCg---GCG---------CCGGCAG-CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 16227 0.77 0.132059
Target:  5'- cCCUCCGCCuccgucaucgucGUCGUcGCCGUCGCcCGCGg -3'
miRNA:   3'- -GGAGGCGG------------CGGCGcCGGCAGCG-GCGC- -5'
8981 5' -66.7 NC_002512.2 + 126836 0.77 0.135145
Target:  5'- uCgUCgCGCuCGUCGCGGUCGUCGCCGUc -3'
miRNA:   3'- -GgAG-GCG-GCGGCGCCGGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 214923 0.77 0.135145
Target:  5'- uCCaCCGCgGCCGCGGCuucguccuccCGUgGCCGCGg -3'
miRNA:   3'- -GGaGGCGgCGGCGCCG----------GCAgCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 74623 0.77 0.135145
Target:  5'- gCCUCgGCUcCCGCGaGCCGUCgacGCCGCGa -3'
miRNA:   3'- -GGAGgCGGcGGCGC-CGGCAG---CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 142023 0.77 0.135145
Target:  5'- uCUUCCGCgGCCgGgGGCCGgcgaccCGCCGCGa -3'
miRNA:   3'- -GGAGGCGgCGG-CgCCGGCa-----GCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.