miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 194610 1.1 0.000647
Target:  5'- cCCUCCGCCGCCGCGGCCGUCGCCGCGg -3'
miRNA:   3'- -GGAGGCGGCGGCGCCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 226809 0.86 0.029915
Target:  5'- --gCCGCCGCCGUGGCCGcCGCCGCc -3'
miRNA:   3'- ggaGGCGGCGGCGCCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 154608 0.86 0.030656
Target:  5'- gUCgCCGCCGCCGCcGCCGUCGCCGCc -3'
miRNA:   3'- -GGaGGCGGCGGCGcCGGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 222515 0.86 0.033803
Target:  5'- gCCUggCCGcCCGCCGCGGCCGcCGUCGCGg -3'
miRNA:   3'- -GGA--GGC-GGCGGCGCCGGCaGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 70905 0.84 0.041078
Target:  5'- gCCUCCGCCccGCCGUGGCCGccgaaccgcUCGCCGCc -3'
miRNA:   3'- -GGAGGCGG--CGGCGCCGGC---------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 133666 0.83 0.047519
Target:  5'- gCCgCCGCCGCCGCGGCCGcCGUgGCc -3'
miRNA:   3'- -GGaGGCGGCGGCGCCGGCaGCGgCGc -5'
8981 5' -66.7 NC_002512.2 + 96296 0.83 0.048684
Target:  5'- gCCgcgggCCGCCGCCGCgggcgGGCCgGUCGCCGCa -3'
miRNA:   3'- -GGa----GGCGGCGGCG-----CCGG-CAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 184433 0.82 0.058778
Target:  5'- gCCUCgGCCGCCGcCGGCgucggacagggaGUCGCCGCGg -3'
miRNA:   3'- -GGAGgCGGCGGC-GCCGg-----------CAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 212989 0.81 0.068221
Target:  5'- aCCUCauCGUCGCCGCGGCCGUCGggcCCGgGg -3'
miRNA:   3'- -GGAG--GCGGCGGCGCCGGCAGC---GGCgC- -5'
8981 5' -66.7 NC_002512.2 + 28235 0.8 0.080638
Target:  5'- --aCCGCgGCCGgGGCCGUCgcGCCGCGa -3'
miRNA:   3'- ggaGGCGgCGGCgCCGGCAG--CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 82924 0.8 0.08258
Target:  5'- gUCUCgGCCGCgGCcGCCGUCGUCGCGc -3'
miRNA:   3'- -GGAGgCGGCGgCGcCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 148661 0.79 0.090158
Target:  5'- cCUUCCGCCacccgauccagcggGCCGUGGCCcucGUCGCCGCu -3'
miRNA:   3'- -GGAGGCGG--------------CGGCGCCGG---CAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 184973 0.79 0.090801
Target:  5'- gCgUCCGCCG-CGCGGCCGUCGaCGUGg -3'
miRNA:   3'- -GgAGGCGGCgGCGCCGGCAGCgGCGC- -5'
8981 5' -66.7 NC_002512.2 + 225316 0.79 0.090801
Target:  5'- uCCUCCGCCgccccagacGCCGCaGCCGUCGgUCGCGc -3'
miRNA:   3'- -GGAGGCGG---------CGGCGcCGGCAGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 192128 0.79 0.090801
Target:  5'- cCCUCCGCgucucCGUucUGCGGCCGUCGUCGUGa -3'
miRNA:   3'- -GGAGGCG-----GCG--GCGCCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 81420 0.79 0.095197
Target:  5'- uCC-CCGCCGUCGCGGCucCGUC-CCGCGg -3'
miRNA:   3'- -GGaGGCGGCGGCGCCG--GCAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 77072 0.79 0.097471
Target:  5'- -aUCCuGCuCGCCGCccGCCGUCGCCGCGg -3'
miRNA:   3'- ggAGG-CG-GCGGCGc-CGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 137335 0.79 0.097471
Target:  5'- gCCUCCgacgucGUCGCCGCGGCCGcCGCgGCc -3'
miRNA:   3'- -GGAGG------CGGCGGCGCCGGCaGCGgCGc -5'
8981 5' -66.7 NC_002512.2 + 110491 0.79 0.101453
Target:  5'- uCCUCCGUCggcgucauguucggGuuGCGGCCGcgCGCCGCGa -3'
miRNA:   3'- -GGAGGCGG--------------CggCGCCGGCa-GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 27387 0.79 0.104601
Target:  5'- gCCUCCGCCGCCGaacugcugaguCGGCagaUCGCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGC-----------GCCGgc-AGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.