miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 102789 0.76 0.144803
Target:  5'- aUCUCCGCCGCCGCcGCCGcCcuCCGCu -3'
miRNA:   3'- -GGAGGCGGCGGCGcCGGCaGc-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 75576 0.78 0.112221
Target:  5'- gCCgCCGCCGUCGCGGUCGaCGUgGCGg -3'
miRNA:   3'- -GGaGGCGGCGGCGCCGGCaGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 123119 0.77 0.123189
Target:  5'- cCCgCCGCCGUCgGCGGCCGUC-CCGgGg -3'
miRNA:   3'- -GGaGGCGGCGG-CGCCGGCAGcGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 16227 0.77 0.132059
Target:  5'- cCCUCCGCCuccgucaucgucGUCGUcGCCGUCGCcCGCGg -3'
miRNA:   3'- -GGAGGCGG------------CGGCGcCGGCAGCG-GCGC- -5'
8981 5' -66.7 NC_002512.2 + 142023 0.77 0.135145
Target:  5'- uCUUCCGCgGCCgGgGGCCGgcgaccCGCCGCGa -3'
miRNA:   3'- -GGAGGCGgCGG-CgCCGGCa-----GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 59054 0.77 0.141516
Target:  5'- uCCgggUCGCCGCCGCuGCCGcCGCUGCc -3'
miRNA:   3'- -GGa--GGCGGCGGCGcCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 69232 0.77 0.141516
Target:  5'- uCC-CCGUCGCCGCGGUCGauccagggUCGuCCGCGu -3'
miRNA:   3'- -GGaGGCGGCGGCGCCGGC--------AGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 7233 0.76 0.144803
Target:  5'- cCCUCgGCC-CgGcCGGCCGUCGCgGCGg -3'
miRNA:   3'- -GGAGgCGGcGgC-GCCGGCAGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 102633 0.76 0.144803
Target:  5'- aCgCCGUCGCCGUuccGGCCGUCGCCuCGg -3'
miRNA:   3'- gGaGGCGGCGGCG---CCGGCAGCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 93777 0.78 0.109625
Target:  5'- cCCUccCCGUCGCUGUGGCCGcCGCCaGCGc -3'
miRNA:   3'- -GGA--GGCGGCGGCGCCGGCaGCGG-CGC- -5'
8981 5' -66.7 NC_002512.2 + 27387 0.79 0.104601
Target:  5'- gCCUCCGCCGCCGaacugcugaguCGGCagaUCGCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGC-----------GCCGgc-AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 110491 0.79 0.101453
Target:  5'- uCCUCCGUCggcgucauguucggGuuGCGGCCGcgCGCCGCGa -3'
miRNA:   3'- -GGAGGCGG--------------CggCGCCGGCa-GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 70905 0.84 0.041078
Target:  5'- gCCUCCGCCccGCCGUGGCCGccgaaccgcUCGCCGCc -3'
miRNA:   3'- -GGAGGCGG--CGGCGCCGGC---------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 133666 0.83 0.047519
Target:  5'- gCCgCCGCCGCCGCGGCCGcCGUgGCc -3'
miRNA:   3'- -GGaGGCGGCGGCGCCGGCaGCGgCGc -5'
8981 5' -66.7 NC_002512.2 + 96296 0.83 0.048684
Target:  5'- gCCgcgggCCGCCGCCGCgggcgGGCCgGUCGCCGCa -3'
miRNA:   3'- -GGa----GGCGGCGGCG-----CCGG-CAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 28235 0.8 0.080638
Target:  5'- --aCCGCgGCCGgGGCCGUCgcGCCGCGa -3'
miRNA:   3'- ggaGGCGgCGGCgCCGGCAG--CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 82924 0.8 0.08258
Target:  5'- gUCUCgGCCGCgGCcGCCGUCGUCGCGc -3'
miRNA:   3'- -GGAGgCGGCGgCGcCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 192128 0.79 0.090801
Target:  5'- cCCUCCGCgucucCGUucUGCGGCCGUCGUCGUGa -3'
miRNA:   3'- -GGAGGCG-----GCG--GCGCCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 81420 0.79 0.095197
Target:  5'- uCC-CCGCCGUCGCGGCucCGUC-CCGCGg -3'
miRNA:   3'- -GGaGGCGGCGGCGCCG--GCAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 137335 0.79 0.097471
Target:  5'- gCCUCCgacgucGUCGCCGCGGCCGcCGCgGCc -3'
miRNA:   3'- -GGAGG------CGGCGGCGCCGGCaGCGgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.