miRNA display CGI


Results 1 - 20 of 551 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 81777 0.66 0.610177
Target:  5'- aCUCgGCCGgcucagaUCGCgacucuagccacgagGGCCGacgCGCCGCGa -3'
miRNA:   3'- gGAGgCGGC-------GGCG---------------CCGGCa--GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 172940 0.66 0.589246
Target:  5'- aCCUUCGCCGCCuCGGUgGU-GCUcCGg -3'
miRNA:   3'- -GGAGGCGGCGGcGCCGgCAgCGGcGC- -5'
8981 5' -66.7 NC_002512.2 + 117872 0.66 0.589246
Target:  5'- uUCggCCGCaagacggaCGCCGgGGgcCCGUCGCUGCu -3'
miRNA:   3'- -GGa-GGCG--------GCGGCgCC--GGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 194610 1.1 0.000647
Target:  5'- cCCUCCGCCGCCGCGGCCGUCGCCGCGg -3'
miRNA:   3'- -GGAGGCGGCGGCGCCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 108793 0.66 0.607441
Target:  5'- aCUCUacggGCCGCUGCGggcGCUGUU-CCGCGa -3'
miRNA:   3'- gGAGG----CGGCGGCGC---CGGCAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 119700 0.66 0.607441
Target:  5'- cCCUgCGCgCGagaaGCGGCCGgccgGCCGUGc -3'
miRNA:   3'- -GGAgGCG-GCgg--CGCCGGCag--CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 126764 0.66 0.598333
Target:  5'- gCCUCggggCGCgGCgGCGGCgGcgacgcgUGCCGCGc -3'
miRNA:   3'- -GGAG----GCGgCGgCGCCGgCa------GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 96137 0.66 0.598333
Target:  5'- --gUCGUCGUCGCGGgcgcucuccUCGUCGUCGCu -3'
miRNA:   3'- ggaGGCGGCGGCGCC---------GGCAGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 104491 0.66 0.598333
Target:  5'- gUUCCGCUGCCGaCGcCUGUUccaggGCCGCu -3'
miRNA:   3'- gGAGGCGGCGGC-GCcGGCAG-----CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 183162 0.66 0.589246
Target:  5'- uCC-CCGCCGCCGCcGCCaugacGUaCGCCa-- -3'
miRNA:   3'- -GGaGGCGGCGGCGcCGG-----CA-GCGGcgc -5'
8981 5' -66.7 NC_002512.2 + 185713 0.66 0.597424
Target:  5'- aCCaCCGCCGCUucgauaccaagcuGCGcGUCGUCGUCGa- -3'
miRNA:   3'- -GGaGGCGGCGG-------------CGC-CGGCAGCGGCgc -5'
8981 5' -66.7 NC_002512.2 + 172893 0.66 0.598333
Target:  5'- aCC-CgGCCGCCcaCGGCUGUCccCCGUGg -3'
miRNA:   3'- -GGaGgCGGCGGc-GCCGGCAGc-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 219750 0.66 0.607441
Target:  5'- aCCUCUucugcugagGCCGaacauauuugcCCGCGGCCGgcccgGCCGgGg -3'
miRNA:   3'- -GGAGG---------CGGC-----------GGCGCCGGCag---CGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 215538 0.66 0.589246
Target:  5'- cCCUCCGggagaUC-CUGCuGGCCGUCGgCGCc -3'
miRNA:   3'- -GGAGGC-----GGcGGCG-CCGGCAGCgGCGc -5'
8981 5' -66.7 NC_002512.2 + 174659 0.66 0.607441
Target:  5'- uUCUCCagguGCCGCaCGaucagccgguacCGGCCGUUcagcagguugGCCGCGu -3'
miRNA:   3'- -GGAGG----CGGCG-GC------------GCCGGCAG----------CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 183497 0.66 0.598333
Target:  5'- --gCCGCCuacgGCCGCgagggggaGGCCGUCcucgccugGCUGCGg -3'
miRNA:   3'- ggaGGCGG----CGGCG--------CCGGCAG--------CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 201711 0.66 0.589246
Target:  5'- -aUCgGCgGCgGC-GUCGUCGUCGCGg -3'
miRNA:   3'- ggAGgCGgCGgCGcCGGCAGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 157350 0.66 0.589246
Target:  5'- gUUCCGCCugGCCGCcgaGGuCCGggcCGCCGgGc -3'
miRNA:   3'- gGAGGCGG--CGGCG---CC-GGCa--GCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 150528 0.66 0.607441
Target:  5'- gUUCCa-CGCgGCGGCCGcgaggguacgcCGCCGCGa -3'
miRNA:   3'- gGAGGcgGCGgCGCCGGCa----------GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 200776 0.66 0.598333
Target:  5'- --gUCGCCaucGCCaUGGCCGcCGCCGCc -3'
miRNA:   3'- ggaGGCGG---CGGcGCCGGCaGCGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.