miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 372 0.69 0.408777
Target:  5'- uCCUCUGCCGCCuccugcCGGCCuccucucccccCGCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGc-----GCCGGca---------GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 417 0.68 0.458302
Target:  5'- gCCUCCuCgCGcCCGCGaCCGaCGCCGCa -3'
miRNA:   3'- -GGAGGcG-GC-GGCGCcGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 1115 0.66 0.562151
Target:  5'- gUCUCCGCCGUCuCGGUCGcCuccuCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGcGCCGGCaGc---GGCGc -5'
8981 5' -66.7 NC_002512.2 + 1149 0.79 0.104601
Target:  5'- aUCUCCGCCGuCCGCGuCCGUCuCCGCa -3'
miRNA:   3'- -GGAGGCGGC-GGCGCcGGCAGcGGCGc -5'
8981 5' -66.7 NC_002512.2 + 1616 0.66 0.589246
Target:  5'- cUCUCCcacCCGguCCGCGGUCaGUCGCCcccGCGu -3'
miRNA:   3'- -GGAGGc--GGC--GGCGCCGG-CAGCGG---CGC- -5'
8981 5' -66.7 NC_002512.2 + 1664 0.69 0.410323
Target:  5'- cCCUucCCGCCGUCucgccCGGCC-UCGaCCGCGg -3'
miRNA:   3'- -GGA--GGCGGCGGc----GCCGGcAGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 1828 0.71 0.305051
Target:  5'- gUCUCCcgcgccgcaGCCGuCCGCGGgCGucUCGCCGCc -3'
miRNA:   3'- -GGAGG---------CGGC-GGCGCCgGC--AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 2192 0.72 0.263501
Target:  5'- gCCcCCGCCGCCGuCGucgucucggucGCCGgcggCGCCGCc -3'
miRNA:   3'- -GGaGGCGGCGGC-GC-----------CGGCa---GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 2255 0.7 0.372809
Target:  5'- gCUCCGUCGCCuGaccucGCCGcCGCCGCc -3'
miRNA:   3'- gGAGGCGGCGG-Cgc---CGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 2287 0.72 0.265747
Target:  5'- cCCUCCgGCCGCUGCGGgUGgcggggcucugcugCGCCgGCGg -3'
miRNA:   3'- -GGAGG-CGGCGGCGCCgGCa-------------GCGG-CGC- -5'
8981 5' -66.7 NC_002512.2 + 2366 0.66 0.57115
Target:  5'- cCCgUCCGCCGCCGgacucuccccccCGG--GUCGCgGCGu -3'
miRNA:   3'- -GG-AGGCGGCGGC------------GCCggCAGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 2652 0.68 0.466588
Target:  5'- cCCgcCCGuCCGCCGCGccucCCGgucCGCCGCc -3'
miRNA:   3'- -GGa-GGC-GGCGGCGCc---GGCa--GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 2783 0.66 0.562151
Target:  5'- aCUCCGUCGUCGCcGCC-UCGuUCGCc -3'
miRNA:   3'- gGAGGCGGCGGCGcCGGcAGC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 3049 0.68 0.458302
Target:  5'- gCUCCGCCuugaCgGCGGCgGaCGCgGCGg -3'
miRNA:   3'- gGAGGCGGc---GgCGCCGgCaGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 3164 0.71 0.328969
Target:  5'- gCCgUCGUCGcCCGCGGCCucccgucgcucgacGcCGCCGCGg -3'
miRNA:   3'- -GGaGGCGGC-GGCGCCGG--------------CaGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 3273 0.7 0.356353
Target:  5'- --cCCGUCGCUGCGucGCCGUCcccuccucccccggGCCGCGc -3'
miRNA:   3'- ggaGGCGGCGGCGC--CGGCAG--------------CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 3690 0.66 0.580183
Target:  5'- cCCggCCGCgCGCuaacggCGCGGCCGUCuCUGUc -3'
miRNA:   3'- -GGa-GGCG-GCG------GCGCCGGCAGcGGCGc -5'
8981 5' -66.7 NC_002512.2 + 4089 0.67 0.553191
Target:  5'- aCC-CgGCCGcCCGCGGCCcgGcCGgCGCa -3'
miRNA:   3'- -GGaGgCGGC-GGCGCCGG--CaGCgGCGc -5'
8981 5' -66.7 NC_002512.2 + 4836 0.69 0.395036
Target:  5'- gCgcgCCGCCGaggagCGCGGCCaucgcgggguUCGCCGCGu -3'
miRNA:   3'- gGa--GGCGGCg----GCGCCGGc---------AGCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 5070 0.67 0.500475
Target:  5'- --cCCGcCCGCgGCguuGGUCGUCGUCGCc -3'
miRNA:   3'- ggaGGC-GGCGgCG---CCGGCAGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.