miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 229820 0.68 0.458302
Target:  5'- gCCUCCuCgCGcCCGCGaCCGaCGCCGCa -3'
miRNA:   3'- -GGAGGcG-GC-GGCGCcGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 229775 0.69 0.408777
Target:  5'- uCCUCUGCCGCCuccugcCGGCCuccucucccccCGCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGc-----GCCGGca---------GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 228204 0.7 0.380123
Target:  5'- aCUUCGagGCCGCGGUCGagGCCGgGc -3'
miRNA:   3'- gGAGGCggCGGCGCCGGCagCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 227780 0.7 0.351447
Target:  5'- --cCCGCgaccgaGCCGCGGCCGUacCGcCCGCu -3'
miRNA:   3'- ggaGGCGg-----CGGCGCCGGCA--GC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 227452 0.67 0.553191
Target:  5'- cCUUCgCGCUGCCGggggagaGGCCGggggcggccgGCCGCGa -3'
miRNA:   3'- -GGAG-GCGGCGGCg------CCGGCag--------CGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 226836 0.68 0.466588
Target:  5'- gCgUCCGCCGCCGUcaaGGCgGagcagGCCGCc -3'
miRNA:   3'- -GgAGGCGGCGGCG---CCGgCag---CGGCGc -5'
8981 5' -66.7 NC_002512.2 + 226809 0.86 0.029915
Target:  5'- --gCCGCCGCCGUGGCCGcCGCCGCc -3'
miRNA:   3'- ggaGGCGGCGGCGCCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 226680 0.77 0.135145
Target:  5'- cUCUCUGagCGCCG-GGCCGUCGCcCGCGg -3'
miRNA:   3'- -GGAGGCg-GCGGCgCCGGCAGCG-GCGC- -5'
8981 5' -66.7 NC_002512.2 + 226201 0.69 0.395036
Target:  5'- aCCUCCGUCGgggacgggaggaCCucCGGaCCGUCGgCCGCGa -3'
miRNA:   3'- -GGAGGCGGC------------GGc-GCC-GGCAGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 225461 0.68 0.483389
Target:  5'- aCC-CCGCCGgUcuaccagcaGCcGCCGUCGaCCGCGa -3'
miRNA:   3'- -GGaGGCGGCgG---------CGcCGGCAGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 225316 0.79 0.090801
Target:  5'- uCCUCCGCCgccccagacGCCGCaGCCGUCGgUCGCGc -3'
miRNA:   3'- -GGAGGCGG---------CGGCGcCGGCAGC-GGCGC- -5'
8981 5' -66.7 NC_002512.2 + 225287 0.67 0.500475
Target:  5'- gCgUCCGUC-UCGCGGCCcgcggCGCCGCc -3'
miRNA:   3'- -GgAGGCGGcGGCGCCGGca---GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 224997 0.72 0.286655
Target:  5'- cCCUcuucCCGUCGCCGCuccuccaGCCGgCGCCGCa -3'
miRNA:   3'- -GGA----GGCGGCGGCGc------CGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 224788 0.66 0.589246
Target:  5'- gUCUCUcCCGCC-CGcGCCGaCGCCgGCGa -3'
miRNA:   3'- -GGAGGcGGCGGcGC-CGGCaGCGG-CGC- -5'
8981 5' -66.7 NC_002512.2 + 224719 0.78 0.114874
Target:  5'- gCCggCCGCCGCCcCGGUCG-CGCCGCu -3'
miRNA:   3'- -GGa-GGCGGCGGcGCCGGCaGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 224675 0.74 0.221775
Target:  5'- --cCCGCCGCCGuCGGCUGgC-CCGCGg -3'
miRNA:   3'- ggaGGCGGCGGC-GCCGGCaGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 224633 0.72 0.269144
Target:  5'- --gUCGCCGCCGCGGCC-UCGgccuaCGCGc -3'
miRNA:   3'- ggaGGCGGCGGCGCCGGcAGCg----GCGC- -5'
8981 5' -66.7 NC_002512.2 + 224339 0.69 0.395036
Target:  5'- uUUCCGCggCGCCGC-GCCGggGUCGCGg -3'
miRNA:   3'- gGAGGCG--GCGGCGcCGGCagCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 223786 0.67 0.535404
Target:  5'- aCCggaCGUCGCCGgGGaCGUCgGCgGCGa -3'
miRNA:   3'- -GGag-GCGGCGGCgCCgGCAG-CGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 223541 0.66 0.562151
Target:  5'- --cCCGCgGcCCGCGGCCccgCGCC-CGg -3'
miRNA:   3'- ggaGGCGgC-GGCGCCGGca-GCGGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.