miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8981 5' -66.7 NC_002512.2 + 116615 0.66 0.562151
Target:  5'- gCCgcggCUGCC-CCGcCGGCCGccccccUCGCUGCc -3'
miRNA:   3'- -GGa---GGCGGcGGC-GCCGGC------AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 186417 0.66 0.562151
Target:  5'- aCCUgUGaCGCCGCGaGCagaaaCGCCGCGa -3'
miRNA:   3'- -GGAgGCgGCGGCGC-CGgca--GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 45555 0.66 0.57115
Target:  5'- aCCUCUucuuGCCGUCGC-GCaCGUCGCaGCu -3'
miRNA:   3'- -GGAGG----CGGCGGCGcCG-GCAGCGgCGc -5'
8981 5' -66.7 NC_002512.2 + 134632 0.66 0.565746
Target:  5'- aCUCCGUgcccuggccccacaaCGCCGUGGCCGagUGCggggccgaCGCGa -3'
miRNA:   3'- gGAGGCG---------------GCGGCGCCGGCa-GCG--------GCGC- -5'
8981 5' -66.7 NC_002512.2 + 5243 0.66 0.57115
Target:  5'- aCUCgGgCGCguaGGCCGagGCCGCGg -3'
miRNA:   3'- gGAGgCgGCGgcgCCGGCagCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 44700 0.66 0.559458
Target:  5'- --aCCGCCGCCGCGuucucggagaagaaGUCcuggaCGCCGCGc -3'
miRNA:   3'- ggaGGCGGCGGCGC--------------CGGca---GCGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 131085 0.66 0.57115
Target:  5'- gCUCCgGCCGCCGgGGUaccuggacgUGgugCGCCGgGc -3'
miRNA:   3'- gGAGG-CGGCGGCgCCG---------GCa--GCGGCgC- -5'
8981 5' -66.7 NC_002512.2 + 33463 0.66 0.57115
Target:  5'- aCCUCUcCCGaCC-CGGCCGcCGCCccccGCGu -3'
miRNA:   3'- -GGAGGcGGC-GGcGCCGGCaGCGG----CGC- -5'
8981 5' -66.7 NC_002512.2 + 109347 0.66 0.574759
Target:  5'- aUCUCUgcgagggaGCCGCCGgGGgaaagccgcgccuccCCGUCaCCGCGa -3'
miRNA:   3'- -GGAGG--------CGGCGGCgCC---------------GGCAGcGGCGC- -5'
8981 5' -66.7 NC_002512.2 + 109568 0.66 0.562151
Target:  5'- aUCUCCGCCGUgcaguaGCGGCgGaUGuCCGCc -3'
miRNA:   3'- -GGAGGCGGCGg-----CGCCGgCaGC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 109090 0.66 0.57115
Target:  5'- -gUCCGUCGacaCCGUGGCCGUcagCGCCagGCu -3'
miRNA:   3'- ggAGGCGGC---GGCGCCGGCA---GCGG--CGc -5'
8981 5' -66.7 NC_002512.2 + 70795 0.66 0.565746
Target:  5'- uCCUCguCGCCGuuGCgcagguugggggaggGGCgCGUCGuCCGCc -3'
miRNA:   3'- -GGAG--GCGGCggCG---------------CCG-GCAGC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 2366 0.66 0.57115
Target:  5'- cCCgUCCGCCGCCGgacucuccccccCGG--GUCGCgGCGu -3'
miRNA:   3'- -GG-AGGCGGCGGC------------GCCggCAGCGgCGC- -5'
8981 5' -66.7 NC_002512.2 + 121681 0.66 0.574759
Target:  5'- --gUCGCCGCCgagugcauaggagacGUGGCCGcccugaaCGCCGCa -3'
miRNA:   3'- ggaGGCGGCGG---------------CGCCGGCa------GCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 1115 0.66 0.562151
Target:  5'- gUCUCCGCCGUCuCGGUCGcCuccuCCGCc -3'
miRNA:   3'- -GGAGGCGGCGGcGCCGGCaGc---GGCGc -5'
8981 5' -66.7 NC_002512.2 + 81356 0.66 0.57115
Target:  5'- gCCUCCcucGCgGCCGgGGCgGgcggCGgCCGCc -3'
miRNA:   3'- -GGAGG---CGgCGGCgCCGgCa---GC-GGCGc -5'
8981 5' -66.7 NC_002512.2 + 83570 0.66 0.57115
Target:  5'- aCggaGCgGCCGUGGCCGUacaCGCCGg- -3'
miRNA:   3'- gGaggCGgCGGCGCCGGCA---GCGGCgc -5'
8981 5' -66.7 NC_002512.2 + 63666 0.66 0.562151
Target:  5'- aCUUCCccaCgCGCgCGCGGCCcuccUCGCCGCc -3'
miRNA:   3'- -GGAGGc--G-GCG-GCGCCGGc---AGCGGCGc -5'
8981 5' -66.7 NC_002512.2 + 63405 0.66 0.562151
Target:  5'- uCCUCCGacCCGCgGUcccGCCGUCcCCGCc -3'
miRNA:   3'- -GGAGGC--GGCGgCGc--CGGCAGcGGCGc -5'
8981 5' -66.7 NC_002512.2 + 117714 0.66 0.565746
Target:  5'- gCUCCGCgcgugcgggcucgagCGCCgGCucGCCGUCGaCCGCc -3'
miRNA:   3'- gGAGGCG---------------GCGG-CGc-CGGCAGC-GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.