miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 3' -51.3 NC_002512.2 + 161711 0.69 0.987894
Target:  5'- gACG-CGGCCggCGACGGGaUCGUCu- -3'
miRNA:   3'- aUGCaGUUGGa-GCUGCUCaAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 100276 0.69 0.987894
Target:  5'- gACGgagcucggCGAgCggGGCGAGUUCGUCGGg -3'
miRNA:   3'- aUGCa-------GUUgGagCUGCUCAAGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 84563 0.69 0.986342
Target:  5'- gGCGcUCGACCUCGACGuAGUUg--CGGa -3'
miRNA:   3'- aUGC-AGUUGGAGCUGC-UCAAgcaGCU- -5'
8982 3' -51.3 NC_002512.2 + 137800 0.69 0.982787
Target:  5'- cACGagAugCUCGACGAGaacugCGUCGu -3'
miRNA:   3'- aUGCagUugGAGCUGCUCaa---GCAGCu -5'
8982 3' -51.3 NC_002512.2 + 14001 0.69 0.982787
Target:  5'- gACGcUCGACCUUuaaACGAGUgugugCGUCGGa -3'
miRNA:   3'- aUGC-AGUUGGAGc--UGCUCAa----GCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 190342 0.69 0.980767
Target:  5'- -uCGUCuACCUcuacgaCGACGGGggCGUCGGc -3'
miRNA:   3'- auGCAGuUGGA------GCUGCUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 167419 0.69 0.979473
Target:  5'- gGCGUCGAUCUCGugcggcggcacgccuGCGcGUUCGUCc- -3'
miRNA:   3'- aUGCAGUUGGAGC---------------UGCuCAAGCAGcu -5'
8982 3' -51.3 NC_002512.2 + 59287 0.69 0.978575
Target:  5'- gACGUCGugCUCGACGGacUCGggUCGGg -3'
miRNA:   3'- aUGCAGUugGAGCUGCUcaAGC--AGCU- -5'
8982 3' -51.3 NC_002512.2 + 95385 0.7 0.976203
Target:  5'- gGCGUaGACCUCGucgaagagccugGCGAGggCGUCGc -3'
miRNA:   3'- aUGCAgUUGGAGC------------UGCUCaaGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 123020 0.7 0.973644
Target:  5'- cUGC-UCGugCgCGACGAGgaggUCGUCGAg -3'
miRNA:   3'- -AUGcAGUugGaGCUGCUCa---AGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 36247 0.7 0.970892
Target:  5'- uUAUGaCGACCUCGGCGg---CGUCGAu -3'
miRNA:   3'- -AUGCaGUUGGAGCUGCucaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 141211 0.7 0.970892
Target:  5'- aGCG-CAGCCggGGCGGGUUCGggCGGu -3'
miRNA:   3'- aUGCaGUUGGagCUGCUCAAGCa-GCU- -5'
8982 3' -51.3 NC_002512.2 + 126475 0.7 0.970892
Target:  5'- gACGgCGuCUUCGACGAGUUCGUgGc -3'
miRNA:   3'- aUGCaGUuGGAGCUGCUCAAGCAgCu -5'
8982 3' -51.3 NC_002512.2 + 102292 0.7 0.96478
Target:  5'- cGCGUCGACCgccagggCGACGucgcggacGGUcCGUCGGg -3'
miRNA:   3'- aUGCAGUUGGa------GCUGC--------UCAaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 106849 0.71 0.957821
Target:  5'- gUGCaGUCGAUCUCGACGAccuccUCGUCGc -3'
miRNA:   3'- -AUG-CAGUUGGAGCUGCUca---AGCAGCu -5'
8982 3' -51.3 NC_002512.2 + 9131 0.71 0.955562
Target:  5'- gACGUCGGCCUCGACggcccagcgcuccauGAGguggagGUCGAa -3'
miRNA:   3'- aUGCAGUUGGAGCUG---------------CUCaag---CAGCU- -5'
8982 3' -51.3 NC_002512.2 + 137539 0.72 0.941212
Target:  5'- cGCGUCcGCggCGACGGGUUCGgucgCGGa -3'
miRNA:   3'- aUGCAGuUGgaGCUGCUCAAGCa---GCU- -5'
8982 3' -51.3 NC_002512.2 + 35242 0.72 0.936481
Target:  5'- -cCGUCGACCUCgGACGGGUgccccgUGUCa- -3'
miRNA:   3'- auGCAGUUGGAG-CUGCUCAa-----GCAGcu -5'
8982 3' -51.3 NC_002512.2 + 115365 0.72 0.936481
Target:  5'- gUGCGUCAGCaggUCGACcGGgaCGUCGAu -3'
miRNA:   3'- -AUGCAGUUGg--AGCUGcUCaaGCAGCU- -5'
8982 3' -51.3 NC_002512.2 + 220900 0.72 0.931513
Target:  5'- -cCGaCGACCUCuACGAGUUCGUCc- -3'
miRNA:   3'- auGCaGUUGGAGcUGCUCAAGCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.