miRNA display CGI


Results 21 - 40 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 76626 0.66 0.954281
Target:  5'- gACCaGGAcccgCCGCAUCGcAUCGGGUUu-- -3'
miRNA:   3'- -UGG-CCUa---GGCGUAGU-UGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 77122 0.66 0.954281
Target:  5'- cGCgGGGUCCGauccuuuUCGACCGGGcUCc-- -3'
miRNA:   3'- -UGgCCUAGGCgu-----AGUUGGCCC-AGuag -5'
8982 5' -55.8 NC_002512.2 + 4202 0.66 0.954662
Target:  5'- cGCCGGAgaucggugggagcggCCGCGggGAgCGGGaCGUCg -3'
miRNA:   3'- -UGGCCUa--------------GGCGUagUUgGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 184753 0.66 0.961496
Target:  5'- --aGGAUCgGCGggCGGcCCGuGGUCGUCg -3'
miRNA:   3'- uggCCUAGgCGUa-GUU-GGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 184660 0.66 0.954281
Target:  5'- cCCGGAUCCuuaucGUcUCGAUCGGGUgGgUCg -3'
miRNA:   3'- uGGCCUAGG-----CGuAGUUGGCCCAgU-AG- -5'
8982 5' -55.8 NC_002512.2 + 72850 0.66 0.957995
Target:  5'- uGCCGGGUCCucGCu----CCGGGccgCGUCg -3'
miRNA:   3'- -UGGCCUAGG--CGuaguuGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 19670 0.66 0.957995
Target:  5'- gAUCGGGUCCGCGUCu-CCGucUCGg- -3'
miRNA:   3'- -UGGCCUAGGCGUAGuuGGCccAGUag -5'
8982 5' -55.8 NC_002512.2 + 36381 0.66 0.957995
Target:  5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3'
miRNA:   3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 49195 0.66 0.957995
Target:  5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3'
miRNA:   3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5'
8982 5' -55.8 NC_002512.2 + 91182 0.66 0.961496
Target:  5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3'
miRNA:   3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 77920 0.66 0.964791
Target:  5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3'
miRNA:   3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 73973 0.67 0.922101
Target:  5'- aGCUGGAggaCGCGUCGgcGCCGGacUCGUCc -3'
miRNA:   3'- -UGGCCUag-GCGUAGU--UGGCCc-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 54511 0.67 0.932419
Target:  5'- gGCCGuGAUgCCG-AUCgAACCGGGaCAUCc -3'
miRNA:   3'- -UGGC-CUA-GGCgUAG-UUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 152953 0.67 0.927374
Target:  5'- -gUGGAUCCGCG--AGCgGGGUCcUCu -3'
miRNA:   3'- ugGCCUAGGCGUagUUGgCCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 34957 0.67 0.932419
Target:  5'- -gCGGAgCgGCcgCGACCGGGUCc-- -3'
miRNA:   3'- ugGCCUaGgCGuaGUUGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 24680 0.67 0.941833
Target:  5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3'
miRNA:   3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 7009 0.67 0.922101
Target:  5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3'
miRNA:   3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 226195 0.67 0.946203
Target:  5'- gGCCGcg-CCGUuagcgcgCGGCCGGGcCAUCa -3'
miRNA:   3'- -UGGCcuaGGCGua-----GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 82095 0.67 0.946628
Target:  5'- cCCGGAUCCGgAUCAuggucuugaggcacuCCaGGUCcUCg -3'
miRNA:   3'- uGGCCUAGGCgUAGUu--------------GGcCCAGuAG- -5'
8982 5' -55.8 NC_002512.2 + 139246 0.67 0.932419
Target:  5'- gACCGcGG-CCGCGgc-GCCGGGUCGc- -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.