Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8982 | 5' | -55.8 | NC_002512.2 | + | 36381 | 0.66 | 0.957995 |
Target: 5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3' miRNA: 3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 170033 | 0.66 | 0.964791 |
Target: 5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3' miRNA: 3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 60740 | 0.66 | 0.961496 |
Target: 5'- aACCGcGA-CCGCggCGGCCGGG-CGg- -3' miRNA: 3'- -UGGC-CUaGGCGuaGUUGGCCCaGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 19670 | 0.66 | 0.957995 |
Target: 5'- gAUCGGGUCCGCGUCu-CCGucUCGg- -3' miRNA: 3'- -UGGCCUAGGCGUAGuuGGCccAGUag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 72850 | 0.66 | 0.957995 |
Target: 5'- uGCCGGGUCCucGCu----CCGGGccgCGUCg -3' miRNA: 3'- -UGGCCUAGG--CGuaguuGGCCCa--GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 49195 | 0.66 | 0.957995 |
Target: 5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3' miRNA: 3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 110452 | 0.66 | 0.964791 |
Target: 5'- uGCCGGAUCauCAcCAGCaGGGcCGUCa -3' miRNA: 3'- -UGGCCUAGgcGUaGUUGgCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 25140 | 0.66 | 0.964791 |
Target: 5'- gGCCGGGaUCGCugagCAcCCGGGUCc-- -3' miRNA: 3'- -UGGCCUaGGCGua--GUuGGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 91182 | 0.66 | 0.961496 |
Target: 5'- uGCgGGAUCCGgGUCAGggagaccgccacCCGGGgcaCGUUc -3' miRNA: 3'- -UGgCCUAGGCgUAGUU------------GGCCCa--GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 77998 | 0.66 | 0.964791 |
Target: 5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3' miRNA: 3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 77122 | 0.66 | 0.954281 |
Target: 5'- cGCgGGGUCCGauccuuuUCGACCGGGcUCc-- -3' miRNA: 3'- -UGgCCUAGGCgu-----AGUUGGCCC-AGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 98553 | 0.66 | 0.966051 |
Target: 5'- cCCGGcguUCCGCGgaucCGGCgggcgccucgggcggCGGGUCGUCc -3' miRNA: 3'- uGGCCu--AGGCGUa---GUUG---------------GCCCAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 77920 | 0.66 | 0.964791 |
Target: 5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3' miRNA: 3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 134088 | 0.66 | 0.964791 |
Target: 5'- uAUCGGAUCCGCGUCc-CCGGcGcCu-- -3' miRNA: 3'- -UGGCCUAGGCGUAGuuGGCC-CaGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 76626 | 0.66 | 0.954281 |
Target: 5'- gACCaGGAcccgCCGCAUCGcAUCGGGUUu-- -3' miRNA: 3'- -UGG-CCUa---GGCGUAGU-UGGCCCAGuag -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 138323 | 0.66 | 0.964791 |
Target: 5'- -gCGGAUCCGCGagagcggcguggUCAgcGCCaGGUgGUCc -3' miRNA: 3'- ugGCCUAGGCGU------------AGU--UGGcCCAgUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 4202 | 0.66 | 0.954662 |
Target: 5'- cGCCGGAgaucggugggagcggCCGCGggGAgCGGGaCGUCg -3' miRNA: 3'- -UGGCCUa--------------GGCGUagUUgGCCCaGUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 136168 | 0.66 | 0.964791 |
Target: 5'- cCCGucGAUCCGCcgCGcggcggggucGCCGGGaucgCGUCg -3' miRNA: 3'- uGGC--CUAGGCGuaGU----------UGGCCCa---GUAG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 184660 | 0.66 | 0.954281 |
Target: 5'- cCCGGAUCCuuaucGUcUCGAUCGGGUgGgUCg -3' miRNA: 3'- uGGCCUAGG-----CGuAGUUGGCCCAgU-AG- -5' |
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8982 | 5' | -55.8 | NC_002512.2 | + | 78076 | 0.66 | 0.964791 |
Target: 5'- gGCCGGucUCCGU-UCAcggagacCCGGuGUCGUCa -3' miRNA: 3'- -UGGCCu-AGGCGuAGUu------GGCC-CAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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