miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 3874 0.7 0.84182
Target:  5'- cACCGucAUCgGCGUCAGuuGGGUCgGUCa -3'
miRNA:   3'- -UGGCc-UAGgCGUAGUUggCCCAG-UAG- -5'
8982 5' -55.8 NC_002512.2 + 4202 0.66 0.954662
Target:  5'- cGCCGGAgaucggugggagcggCCGCGggGAgCGGGaCGUCg -3'
miRNA:   3'- -UGGCCUa--------------GGCGUagUUgGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 6353 0.7 0.814802
Target:  5'- gGCCGGcgggCCGCGggcgcgugccguucUCcGCCGuGGUCGUCg -3'
miRNA:   3'- -UGGCCua--GGCGU--------------AGuUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 7009 0.67 0.922101
Target:  5'- cGCaGGAgagCCGCAgggCcuuGCCGGGcUCGUCg -3'
miRNA:   3'- -UGgCCUa--GGCGUa--Gu--UGGCCC-AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 8919 0.68 0.885761
Target:  5'- gGCCaGGG-CgGCcUCGGCCGGGUCGg- -3'
miRNA:   3'- -UGG-CCUaGgCGuAGUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 10707 0.67 0.922101
Target:  5'- aACCG---CCGCAUCGACaaacGGUCGUCa -3'
miRNA:   3'- -UGGCcuaGGCGUAGUUGgc--CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 11150 0.72 0.745601
Target:  5'- gGCCGGAcaCGCGcUCGA-CGGGUCGUCc -3'
miRNA:   3'- -UGGCCUagGCGU-AGUUgGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 17381 0.7 0.83302
Target:  5'- gAUCGuGGUCCGCGUcCAGCCcgaggucGGaGUCGUCg -3'
miRNA:   3'- -UGGC-CUAGGCGUA-GUUGG-------CC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 19670 0.66 0.957995
Target:  5'- gAUCGGGUCCGCGUCu-CCGucUCGg- -3'
miRNA:   3'- -UGGCCUAGGCGUAGuuGGCccAGUag -5'
8982 5' -55.8 NC_002512.2 + 20432 0.73 0.687612
Target:  5'- cGCCGGAgCCGaagAUCAGCCGgccgaugacGGUCAUCc -3'
miRNA:   3'- -UGGCCUaGGCg--UAGUUGGC---------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 24680 0.67 0.941833
Target:  5'- cCCGGG-CCGC-UCGGgCGGGggucUCGUCg -3'
miRNA:   3'- uGGCCUaGGCGuAGUUgGCCC----AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 25140 0.66 0.964791
Target:  5'- gGCCGGGaUCGCugagCAcCCGGGUCc-- -3'
miRNA:   3'- -UGGCCUaGGCGua--GUuGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 32567 0.72 0.736123
Target:  5'- cGCCGGGcgCCGCGgguGCCGgGGUCGUg -3'
miRNA:   3'- -UGGCCUa-GGCGUaguUGGC-CCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 34957 0.67 0.932419
Target:  5'- -gCGGAgCgGCcgCGACCGGGUCc-- -3'
miRNA:   3'- ugGCCUaGgCGuaGUUGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 35044 0.68 0.898758
Target:  5'- uCgGGGUCCGCAcgGGCCGGGaCAg- -3'
miRNA:   3'- uGgCCUAGGCGUagUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 36381 0.66 0.957995
Target:  5'- cACCGuGAcgUUgGCG-CGACCGaGGUCGUCc -3'
miRNA:   3'- -UGGC-CU--AGgCGUaGUUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 42242 0.66 0.964791
Target:  5'- uGCCGGAuauuaccgaUCCGCGgaCGGCCGaaagagggcgauGGUUAUCc -3'
miRNA:   3'- -UGGCCU---------AGGCGUa-GUUGGC------------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 43642 0.69 0.857253
Target:  5'- gGCUGGAUCCGCuguUCca-CGGGUCc-- -3'
miRNA:   3'- -UGGCCUAGGCGu--AGuugGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 45523 0.67 0.932419
Target:  5'- gACgGGA-CCGCAaucCGAUCGGGgCGUCg -3'
miRNA:   3'- -UGgCCUaGGCGUa--GUUGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 49195 0.66 0.957995
Target:  5'- -gCGGAUCCaGUA-CAACCGGGcggCGUg -3'
miRNA:   3'- ugGCCUAGG-CGUaGUUGGCCCa--GUAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.