miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 110546 0.7 0.841029
Target:  5'- gACCGGcguuUCCGCccccgcgcgggagGUCcuGCCGGGUCAg- -3'
miRNA:   3'- -UGGCCu---AGGCG-------------UAGu-UGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 137349 0.71 0.791413
Target:  5'- cGCCGcGG-CCGCcgCGGCCGGGUagAUCc -3'
miRNA:   3'- -UGGC-CUaGGCGuaGUUGGCCCAg-UAG- -5'
8982 5' -55.8 NC_002512.2 + 95725 0.71 0.791413
Target:  5'- cGCCaGGGUCCGgGUCGAcggguacccguCCGGGUUgAUCg -3'
miRNA:   3'- -UGG-CCUAGGCgUAGUU-----------GGCCCAG-UAG- -5'
8982 5' -55.8 NC_002512.2 + 6353 0.7 0.814802
Target:  5'- gGCCGGcgggCCGCGggcgcgugccguucUCcGCCGuGGUCGUCg -3'
miRNA:   3'- -UGGCCua--GGCGU--------------AGuUGGC-CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 57009 0.7 0.820685
Target:  5'- gGCCGGGUCgGCgGUCuGACCGGGgggagcggaggccgCGUCc -3'
miRNA:   3'- -UGGCCUAGgCG-UAG-UUGGCCCa-------------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 113144 0.7 0.825664
Target:  5'- gGCCuGGUCCaucgcCAUCAGCCGGGccaCGUCg -3'
miRNA:   3'- -UGGcCUAGGc----GUAGUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 140119 0.7 0.825664
Target:  5'- uGCCGGAcgUCCGag--AACUGGGUCAUg -3'
miRNA:   3'- -UGGCCU--AGGCguagUUGGCCCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 122812 0.7 0.825664
Target:  5'- -gCGGGUCCccuacguccagcGCGUCGACCGGGacuucucCGUCg -3'
miRNA:   3'- ugGCCUAGG------------CGUAGUUGGCCCa------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 17381 0.7 0.83302
Target:  5'- gAUCGuGGUCCGCGUcCAGCCcgaggucGGaGUCGUCg -3'
miRNA:   3'- -UGGC-CUAGGCGUA-GUUGG-------CC-CAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 130488 0.71 0.791413
Target:  5'- gGCCcGAUCCGUcgCAGCCGGGcugCGa- -3'
miRNA:   3'- -UGGcCUAGGCGuaGUUGGCCCa--GUag -5'
8982 5' -55.8 NC_002512.2 + 103360 0.71 0.773439
Target:  5'- uCCGGggCCGCGg---UCGGGUCGUCc -3'
miRNA:   3'- uGGCCuaGGCGUaguuGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 11150 0.72 0.745601
Target:  5'- gGCCGGAcaCGCGcUCGA-CGGGUCGUCc -3'
miRNA:   3'- -UGGCCUagGCGU-AGUUgGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 85192 0.75 0.568555
Target:  5'- -aCGGGUCCcCGUgGgucGCCGGGUCGUCg -3'
miRNA:   3'- ugGCCUAGGcGUAgU---UGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 80638 0.73 0.657915
Target:  5'- uCCGGccGUCCGCGgcggCGgcGCCGGGUcCGUCg -3'
miRNA:   3'- uGGCC--UAGGCGUa---GU--UGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 20432 0.73 0.687612
Target:  5'- cGCCGGAgCCGaagAUCAGCCGgccgaugacGGUCAUCc -3'
miRNA:   3'- -UGGCCUaGGCg--UAGUUGGC---------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 141195 0.72 0.707206
Target:  5'- uACCGGAUCaugcaGCAgcgCAGCCGGGgCGg- -3'
miRNA:   3'- -UGGCCUAGg----CGUa--GUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 117073 0.72 0.73517
Target:  5'- aACCGGGUggCCGUcaacgccuucaacAcCAAUCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUA--GGCG-------------UaGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 102152 0.72 0.736123
Target:  5'- gGCCGcGA-CCGCG---GCUGGGUCGUCg -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 32567 0.72 0.736123
Target:  5'- cGCCGGGcgCCGCGgguGCCGgGGUCGUg -3'
miRNA:   3'- -UGGCCUa-GGCGUaguUGGC-CCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 109613 0.72 0.745601
Target:  5'- aGCCGGAUcaCCGuCAUCAGCCGGcgGUCc-- -3'
miRNA:   3'- -UGGCCUA--GGC-GUAGUUGGCC--CAGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.