miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8982 5' -55.8 NC_002512.2 + 194509 1.1 0.004262
Target:  5'- aACCGGAUCCGCAUCAACCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUAGGCGUAGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 83102 0.82 0.241837
Target:  5'- uCCGGGUCCggcgguccgGCGUCggUCGGGUCGUCg -3'
miRNA:   3'- uGGCCUAGG---------CGUAGuuGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 188584 0.79 0.370741
Target:  5'- cUCGG-UCUGCGUCGACCaGGUCGUCg -3'
miRNA:   3'- uGGCCuAGGCGUAGUUGGcCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 131335 0.75 0.539298
Target:  5'- cGCCGGAUCCGCGgaacGCCGGG-CGa- -3'
miRNA:   3'- -UGGCCUAGGCGUagu-UGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 227084 0.75 0.539298
Target:  5'- cGCCGGGUcCCGCcggccgcCGGCCGGGUCGg- -3'
miRNA:   3'- -UGGCCUA-GGCGua-----GUUGGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 193927 0.75 0.558753
Target:  5'- cCCGGAcUCCGCugaCGGCCGGGgaaCGUCg -3'
miRNA:   3'- uGGCCU-AGGCGua-GUUGGCCCa--GUAG- -5'
8982 5' -55.8 NC_002512.2 + 85192 0.75 0.568555
Target:  5'- -aCGGGUCCcCGUgGgucGCCGGGUCGUCg -3'
miRNA:   3'- ugGCCUAGGcGUAgU---UGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 87797 0.74 0.587291
Target:  5'- uACCGGGUCCGCGUucgguugcaccccCAgcgaucccccgGCCGGG-CGUCg -3'
miRNA:   3'- -UGGCCUAGGCGUA-------------GU-----------UGGCCCaGUAG- -5'
8982 5' -55.8 NC_002512.2 + 225798 0.74 0.618079
Target:  5'- gGCCGGG-CCGCGggCGGCCGGGUgGc- -3'
miRNA:   3'- -UGGCCUaGGCGUa-GUUGGCCCAgUag -5'
8982 5' -55.8 NC_002512.2 + 213249 0.73 0.647966
Target:  5'- gGCCGGAUCUGCGUCuacGACaUGGGgcccgugugcuUCAUCa -3'
miRNA:   3'- -UGGCCUAGGCGUAG---UUG-GCCC-----------AGUAG- -5'
8982 5' -55.8 NC_002512.2 + 104971 0.73 0.651948
Target:  5'- cGCCGGGUCCGCcUCGAgguaggggagguagcCCGGGUuccgcacgggcgCGUCg -3'
miRNA:   3'- -UGGCCUAGGCGuAGUU---------------GGCCCA------------GUAG- -5'
8982 5' -55.8 NC_002512.2 + 80638 0.73 0.657915
Target:  5'- uCCGGccGUCCGCGgcggCGgcGCCGGGUcCGUCg -3'
miRNA:   3'- uGGCC--UAGGCGUa---GU--UGGCCCA-GUAG- -5'
8982 5' -55.8 NC_002512.2 + 109063 0.73 0.677746
Target:  5'- gACCGGAcccgCCGCGUC--CCGGGUCc-- -3'
miRNA:   3'- -UGGCCUa---GGCGUAGuuGGCCCAGuag -5'
8982 5' -55.8 NC_002512.2 + 20432 0.73 0.687612
Target:  5'- cGCCGGAgCCGaagAUCAGCCGgccgaugacGGUCAUCc -3'
miRNA:   3'- -UGGCCUaGGCg--UAGUUGGC---------CCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 153285 0.72 0.697435
Target:  5'- gGCUGGcUCCGCuggGUCGGuCCGGGUCGg- -3'
miRNA:   3'- -UGGCCuAGGCG---UAGUU-GGCCCAGUag -5'
8982 5' -55.8 NC_002512.2 + 141195 0.72 0.707206
Target:  5'- uACCGGAUCaugcaGCAgcgCAGCCGGGgCGg- -3'
miRNA:   3'- -UGGCCUAGg----CGUa--GUUGGCCCaGUag -5'
8982 5' -55.8 NC_002512.2 + 117073 0.72 0.73517
Target:  5'- aACCGGGUggCCGUcaacgccuucaacAcCAAUCGGGUCAUCa -3'
miRNA:   3'- -UGGCCUA--GGCG-------------UaGUUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 32567 0.72 0.736123
Target:  5'- cGCCGGGcgCCGCGgguGCCGgGGUCGUg -3'
miRNA:   3'- -UGGCCUa-GGCGUaguUGGC-CCAGUAg -5'
8982 5' -55.8 NC_002512.2 + 102152 0.72 0.736123
Target:  5'- gGCCGcGA-CCGCG---GCUGGGUCGUCg -3'
miRNA:   3'- -UGGC-CUaGGCGUaguUGGCCCAGUAG- -5'
8982 5' -55.8 NC_002512.2 + 224935 0.72 0.745601
Target:  5'- gACCGGGUCCGU----GCCGGuGUCGcUCg -3'
miRNA:   3'- -UGGCCUAGGCGuaguUGGCC-CAGU-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.