miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 137225 0.66 0.684543
Target:  5'- gGCGcGGGCGgccgucCCGGAuccgcgcggguccCGGCGCcGGCGGCc -3'
miRNA:   3'- aUGC-UCCGC------GGCCU-------------GUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 74400 0.66 0.704348
Target:  5'- cAUGGGG-GuCCGGACGGUgccgacgaacucGCGGuCGACg -3'
miRNA:   3'- aUGCUCCgC-GGCCUGUCG------------CGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 103042 0.66 0.666479
Target:  5'- gACGAcGGCGacgaCCGcGACgAGCGCGaCGACg -3'
miRNA:   3'- aUGCU-CCGC----GGC-CUG-UCGCGCcGCUG- -5'
8984 5' -62.9 NC_002512.2 + 103670 0.66 0.712767
Target:  5'- cACGA-GCGCCucgacgucgcagaGGGCGGCggacGCGGCGGg -3'
miRNA:   3'- aUGCUcCGCGG-------------CCUGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 30595 0.66 0.692111
Target:  5'- gAgGAGGCcaccaaCCGGAgGGCGCGGauguucgggccgccCGACa -3'
miRNA:   3'- aUgCUCCGc-----GGCCUgUCGCGCC--------------GCUG- -5'
8984 5' -62.9 NC_002512.2 + 90933 0.66 0.704348
Target:  5'- gACGGGcGCGaCCgGGGCGuGCGUGggcGCGACg -3'
miRNA:   3'- aUGCUC-CGC-GG-CCUGU-CGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198018 0.66 0.7137
Target:  5'- gACgGGGGCGagGGAC-GCGCGcGCGAg -3'
miRNA:   3'- aUG-CUCCGCggCCUGuCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 126508 0.66 0.685491
Target:  5'- cGCGA-GCGCCucGGCGGCucCGGCGGCc -3'
miRNA:   3'- aUGCUcCGCGGc-CUGUCGc-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 89670 0.66 0.704348
Target:  5'- gACGcGGUGCgaaGGCGGCGgGGCGAg -3'
miRNA:   3'- aUGCuCCGCGgc-CUGUCGCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 75431 0.66 0.7137
Target:  5'- gGCGGGaCGuCCGGAuCGGgGCGG-GACg -3'
miRNA:   3'- aUGCUCcGC-GGCCU-GUCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 127670 0.66 0.704348
Target:  5'- -uCGAGG-GCCGcucCGGcCGCGGCGAUc -3'
miRNA:   3'- auGCUCCgCGGCcu-GUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128486 0.66 0.685491
Target:  5'- aGCGAcagcGGuCGgCGGACAGCGCccgGGUGGg -3'
miRNA:   3'- aUGCU----CC-GCgGCCUGUCGCG---CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 200806 0.66 0.685491
Target:  5'- gACGAGGCGggacgcgacggcaUGGACgcgaaggucagcgggGGCGCGGCG-Cg -3'
miRNA:   3'- aUGCUCCGCg------------GCCUG---------------UCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 191066 0.66 0.685491
Target:  5'- cGCGccuGGCGCUGG-CuGUGCGGCa-- -3'
miRNA:   3'- aUGCu--CCGCGGCCuGuCGCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 178691 0.66 0.704348
Target:  5'- -cCGAGGC-CC--GCAGCGCGGCcGCc -3'
miRNA:   3'- auGCUCCGcGGccUGUCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 190541 0.66 0.70341
Target:  5'- gGCGAGGgaccggcUGCUGGGCAcCGaGGCGGCc -3'
miRNA:   3'- aUGCUCC-------GCGGCCUGUcGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 185168 0.66 0.695885
Target:  5'- gGCGcGGCGuCCaGGACuucuucuccgagaaCGCGGCGGCg -3'
miRNA:   3'- aUGCuCCGC-GG-CCUGuc------------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 219705 0.66 0.685491
Target:  5'- aGCGucGGCGCUcgGGGC-GCGagaGGCGGCc -3'
miRNA:   3'- aUGCu-CCGCGG--CCUGuCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 165397 0.66 0.7137
Target:  5'- -uCGGGGCGCUcaugguccaGGAgGGC-CGGCGGg -3'
miRNA:   3'- auGCUCCGCGG---------CCUgUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 158831 0.66 0.704348
Target:  5'- cGgGAGGUGCUgacgcgGGGgAGCGgGGgGACg -3'
miRNA:   3'- aUgCUCCGCGG------CCUgUCGCgCCgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.