miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 137225 0.66 0.684543
Target:  5'- gGCGcGGGCGgccgucCCGGAuccgcgcggguccCGGCGCcGGCGGCc -3'
miRNA:   3'- aUGC-UCCGC------GGCCU-------------GUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198018 0.66 0.7137
Target:  5'- gACgGGGGCGagGGAC-GCGCGcGCGAg -3'
miRNA:   3'- aUG-CUCCGCggCCUGuCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 104929 0.66 0.666479
Target:  5'- cGCGAcGGCcuccucguCCGGcguCGGCGCGGCGcCg -3'
miRNA:   3'- aUGCU-CCGc-------GGCCu--GUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 75431 0.66 0.7137
Target:  5'- gGCGGGaCGuCCGGAuCGGgGCGG-GACg -3'
miRNA:   3'- aUGCUCcGC-GGCCU-GUCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 101776 0.66 0.7137
Target:  5'- gGCGAgacGGCGCCGucCu-CGCGGCGGa -3'
miRNA:   3'- aUGCU---CCGCGGCcuGucGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 62580 0.66 0.676001
Target:  5'- -uCGAGGCGCaCGGggucgcggaACAGguCGCgGGUGACg -3'
miRNA:   3'- auGCUCCGCG-GCC---------UGUC--GCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96699 0.66 0.685491
Target:  5'- cGCcgcGUGCCGGACuGCGUGGUGGu -3'
miRNA:   3'- aUGcucCGCGGCCUGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 34924 0.66 0.7137
Target:  5'- gACGAGaCGaCGG-CGGgguCGCGGCGACg -3'
miRNA:   3'- aUGCUCcGCgGCCuGUC---GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128777 0.66 0.704348
Target:  5'- gACGAGGCGCUgcucacccucuGGGucucCGGCGUGGUccgcgGGCg -3'
miRNA:   3'- aUGCUCCGCGG-----------CCU----GUCGCGCCG-----CUG- -5'
8984 5' -62.9 NC_002512.2 + 165397 0.66 0.7137
Target:  5'- -uCGGGGCGCUcaugguccaGGAgGGC-CGGCGGg -3'
miRNA:   3'- auGCUCCGCGG---------CCUgUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 91008 0.66 0.70341
Target:  5'- --aGGGGCGUCGGAggcccauCAGCGggauaCGGgGACu -3'
miRNA:   3'- augCUCCGCGGCCU-------GUCGC-----GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 11455 0.66 0.704348
Target:  5'- gACGGGG-GCCGGGgaaGGgGCGGaGACc -3'
miRNA:   3'- aUGCUCCgCGGCCUg--UCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 40660 0.66 0.684543
Target:  5'- cGCGAcGGCGaCGGACggauccgacgucgAGCaugccgcccGCGGCGACc -3'
miRNA:   3'- aUGCU-CCGCgGCCUG-------------UCG---------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 112773 0.66 0.67505
Target:  5'- cGCGGGGCcccgugccgcuguGCCGGGucCAGgGCGGCc-- -3'
miRNA:   3'- aUGCUCCG-------------CGGCCU--GUCgCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 10678 0.66 0.666479
Target:  5'- -cCGAGGCcgGCCcGGCAGUGCaGCGGg -3'
miRNA:   3'- auGCUCCG--CGGcCUGUCGCGcCGCUg -5'
8984 5' -62.9 NC_002512.2 + 126508 0.66 0.685491
Target:  5'- cGCGA-GCGCCucGGCGGCucCGGCGGCc -3'
miRNA:   3'- aUGCUcCGCGGc-CUGUCGc-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 217556 0.66 0.7109
Target:  5'- --aGAGacCGCUGGAagugguucugaaacUAGCGCGGUGACu -3'
miRNA:   3'- augCUCc-GCGGCCU--------------GUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 71013 0.66 0.7137
Target:  5'- gACGGGGgGCCGccgcCGGC-CGGuCGACg -3'
miRNA:   3'- aUGCUCCgCGGCcu--GUCGcGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 208888 0.66 0.7137
Target:  5'- cGgGAGGgGCCGGGaauccccGCGCGGgaGGCu -3'
miRNA:   3'- aUgCUCCgCGGCCUgu-----CGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 99571 0.66 0.676001
Target:  5'- -uCGGGGgGUacGACGGCGUGGCGcACa -3'
miRNA:   3'- auGCUCCgCGgcCUGUCGCGCCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.