miRNA display CGI


Results 21 - 40 of 379 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 8790 0.66 0.704348
Target:  5'- gAgGAGGCGCCGGAgGGCGUc----- -3'
miRNA:   3'- aUgCUCCGCGGCCUgUCGCGccgcug -5'
8984 5' -62.9 NC_002512.2 + 9017 0.67 0.637796
Target:  5'- --gGAGaGCGCCGaGGCccCGCGGaCGACg -3'
miRNA:   3'- augCUC-CGCGGC-CUGucGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 9491 0.67 0.646413
Target:  5'- cGCGAgcGGCggguagacgacgGCCGGccccagcACGGCgGCGGCGGCc -3'
miRNA:   3'- aUGCU--CCG------------CGGCC-------UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 9746 0.72 0.356887
Target:  5'- cUugGGGGCggcggaGCCGGACccgccgccccGCGUGGCGGCu -3'
miRNA:   3'- -AugCUCCG------CGGCCUGu---------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 10283 0.66 0.666479
Target:  5'- -cCGAGaaGCCGGGCAGCGaguCGGCcaccagGACg -3'
miRNA:   3'- auGCUCcgCGGCCUGUCGC---GCCG------CUG- -5'
8984 5' -62.9 NC_002512.2 + 10543 0.72 0.364332
Target:  5'- -uCGcGGaCGCCGGGCAGC-CGGCGGg -3'
miRNA:   3'- auGCuCC-GCGGCCUGUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 10678 0.66 0.666479
Target:  5'- -cCGAGGCcgGCCcGGCAGUGCaGCGGg -3'
miRNA:   3'- auGCUCCG--CGGcCUGUCGCGcCGCUg -5'
8984 5' -62.9 NC_002512.2 + 10896 0.69 0.509693
Target:  5'- gAgGAGGCgguugcggaccccggGCCGGACcucccAGC-CGGCGACg -3'
miRNA:   3'- aUgCUCCG---------------CGGCCUG-----UCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 10950 0.66 0.676001
Target:  5'- gACGAGGaCGCCGGcGCccucgggccaGGCaGCGGC-ACg -3'
miRNA:   3'- aUGCUCC-GCGGCC-UG----------UCG-CGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 11145 0.69 0.515164
Target:  5'- -cCGAGG-GCCGGACAcGCGCu-CGACg -3'
miRNA:   3'- auGCUCCgCGGCCUGU-CGCGccGCUG- -5'
8984 5' -62.9 NC_002512.2 + 11380 0.67 0.609076
Target:  5'- gACGAGGgGUCcGACGGCucggacGCGGaCGACc -3'
miRNA:   3'- aUGCUCCgCGGcCUGUCG------CGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 11455 0.66 0.704348
Target:  5'- gACGGGG-GCCGGGgaaGGgGCGGaGACc -3'
miRNA:   3'- aUGCUCCgCGGCCUg--UCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 12384 0.71 0.387304
Target:  5'- -cCGAGcuCGCCuucGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- auGCUCc-GCGG---CCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 13682 0.68 0.571021
Target:  5'- gACGAGGCGaCGG-CcGCGgCGGUGAUc -3'
miRNA:   3'- aUGCUCCGCgGCCuGuCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 14497 0.71 0.387304
Target:  5'- gGCGAacauGGUGCCGGGgcUGGCGaCGGCGAa -3'
miRNA:   3'- aUGCU----CCGCGGCCU--GUCGC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 15118 0.77 0.178762
Target:  5'- gGCGAccGGCGCCGGACuGCGaCGGC-ACg -3'
miRNA:   3'- aUGCU--CCGCGGCCUGuCGC-GCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 15231 0.73 0.301229
Target:  5'- -cCGAGGCGCCGGgaggagagACuGCGaGGCGGCc -3'
miRNA:   3'- auGCUCCGCGGCC--------UGuCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 15927 0.69 0.500629
Target:  5'- ---cAGGUGCCcgacGGAgggauucaaggacauCAGCGCGGCGACu -3'
miRNA:   3'- augcUCCGCGG----CCU---------------GUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 16596 0.69 0.515164
Target:  5'- gACGAGGuCGUCGGcCA-CGCGGCuGAUg -3'
miRNA:   3'- aUGCUCC-GCGGCCuGUcGCGCCG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 16872 0.69 0.533566
Target:  5'- gACGcaccucgagaGGGCcCCGGGCccgacGGcCGCGGCGACg -3'
miRNA:   3'- aUGC----------UCCGcGGCCUG-----UC-GCGCCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.