miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 73 0.67 0.656933
Target:  5'- cGCG-GGCGCgaGGA-GGCGagaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGg-CCUgUCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 152 0.73 0.294763
Target:  5'- gGCGGGGCGCCGG-CGGaggaGCGcGCGcCg -3'
miRNA:   3'- aUGCUCCGCGGCCuGUCg---CGC-CGCuG- -5'
8984 5' -62.9 NC_002512.2 + 200 0.68 0.589995
Target:  5'- --aGGGGC-CCGGGCGGagagggaGCGGgGACc -3'
miRNA:   3'- augCUCCGcGGCCUGUCg------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 2823 0.69 0.52802
Target:  5'- gGCGcGGGCGCgggcccggacgacggCGGGCAGCuGCGGC-ACg -3'
miRNA:   3'- aUGC-UCCGCG---------------GCCUGUCG-CGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 3057 0.72 0.335199
Target:  5'- -uUGAcGGCGgCGGACgcGGCgGCGGCGGCg -3'
miRNA:   3'- auGCU-CCGCgGCCUG--UCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 3440 0.69 0.533566
Target:  5'- cGCG-GG-GCUGGuCGGUGaCGGCGACg -3'
miRNA:   3'- aUGCuCCgCGGCCuGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 4163 0.7 0.479176
Target:  5'- aGCGAGuCGCCGcGGCucGCG-GGCGACa -3'
miRNA:   3'- aUGCUCcGCGGC-CUGu-CGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 4195 0.68 0.571021
Target:  5'- -cUGAGGaCGCCGGAgauCGGUGgGaGCGGCc -3'
miRNA:   3'- auGCUCC-GCGGCCU---GUCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 4442 0.76 0.196324
Target:  5'- gGCGGGGUGCCGGGC-GCGgGGguCGGCg -3'
miRNA:   3'- aUGCUCCGCGGCCUGuCGCgCC--GCUG- -5'
8984 5' -62.9 NC_002512.2 + 4565 0.68 0.561588
Target:  5'- gACGGcugcGGCGUCugGGGCGGCGgaggaGGCGGCg -3'
miRNA:   3'- aUGCU----CCGCGG--CCUGUCGCg----CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 4873 0.75 0.252513
Target:  5'- cGCGugcGGCGCCGGcUGGaggaGCGGCGACg -3'
miRNA:   3'- aUGCu--CCGCGGCCuGUCg---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 6333 0.71 0.403139
Target:  5'- cGCGGGGgGaCCGGGC-GCGgGGcCGGCg -3'
miRNA:   3'- aUGCUCCgC-GGCCUGuCGCgCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 6406 0.7 0.435168
Target:  5'- aGgGAGGCGgCGG-CGGCGCuggggaaGGCGGCc -3'
miRNA:   3'- aUgCUCCGCgGCCuGUCGCG-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 6443 0.71 0.427646
Target:  5'- gGCG-GGCGCCGaGACAGgGguCGGcCGGCa -3'
miRNA:   3'- aUGCuCCGCGGC-CUGUCgC--GCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 7224 0.67 0.618643
Target:  5'- -uCGAGGCGCCccucggcccGGcCGGCcgucGCGGCGGa -3'
miRNA:   3'- auGCUCCGCGG---------CCuGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 7283 0.73 0.320599
Target:  5'- cGCGAGGCcccggggGCCGGACAggccuccuccGCGaCGGCGGg -3'
miRNA:   3'- aUGCUCCG-------CGGCCUGU----------CGC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 7366 0.68 0.589995
Target:  5'- cGCGAcGGCgGCCGcGGCGG-GCGGCcaGGCg -3'
miRNA:   3'- aUGCU-CCG-CGGC-CUGUCgCGCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 7438 0.68 0.54939
Target:  5'- cGCGAGGUugGCCGcGGCccgggggaagccgcGGCGCGGCuGCc -3'
miRNA:   3'- aUGCUCCG--CGGC-CUG--------------UCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 7563 0.67 0.638753
Target:  5'- --gGAGGCGCCGccGCAGCcuccgguaccgccucCGGCGGCa -3'
miRNA:   3'- augCUCCGCGGCc-UGUCGc--------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 8364 0.67 0.637796
Target:  5'- gGCGGGaGCGCCGaGGaucCGCGGCGcCg -3'
miRNA:   3'- aUGCUC-CGCGGC-CUgucGCGCCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.