miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 15231 0.73 0.301229
Target:  5'- -cCGAGGCGCCGGgaggagagACuGCGaGGCGGCc -3'
miRNA:   3'- auGCUCCGCGGCC--------UGuCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 4873 0.75 0.252513
Target:  5'- cGCGugcGGCGCCGGcUGGaggaGCGGCGACg -3'
miRNA:   3'- aUGCu--CCGCGGCCuGUCg---CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 45520 0.75 0.252513
Target:  5'- aGCGcccGCGgCGGGCGGCgGCGGCGACu -3'
miRNA:   3'- aUGCuc-CGCgGCCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 120609 0.74 0.264051
Target:  5'- aGCG-GGCGCCGGugAgaGCGggaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGGCCugU--CGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 57859 0.74 0.276013
Target:  5'- -gUGGGGCgcaugcugccgGCCGGAcCGGCGaCGGCGGCg -3'
miRNA:   3'- auGCUCCG-----------CGGCCU-GUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 122027 0.74 0.282155
Target:  5'- gGCGGaucGGCGCUcgcgcacgcccgGGGCGGCGuCGGCGGCu -3'
miRNA:   3'- aUGCU---CCGCGG------------CCUGUCGC-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 100344 0.74 0.288405
Target:  5'- gGCG-GGCGCCGGccacGCAGCaCGGCGuCg -3'
miRNA:   3'- aUGCuCCGCGGCC----UGUCGcGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 81990 0.73 0.301229
Target:  5'- gGCgGGGGCGUCucggGGGCGGuCGCGGCGAg -3'
miRNA:   3'- aUG-CUCCGCGG----CCUGUC-GCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 155362 0.73 0.301229
Target:  5'- cACGAgcGGCGCUcgaGGuCGGgGCGGCGGCg -3'
miRNA:   3'- aUGCU--CCGCGG---CCuGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 86441 0.75 0.246901
Target:  5'- gACGGGGCGCgGGACGGgggacgggugcCGCGuGUGACu -3'
miRNA:   3'- aUGCUCCGCGgCCUGUC-----------GCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 101634 0.75 0.241392
Target:  5'- cGCGAGuCGCCgcucgaGGGgAGCGCGGCGGCc -3'
miRNA:   3'- aUGCUCcGCGG------CCUgUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 45424 0.75 0.241392
Target:  5'- gACGGcGGCGCCGGc---CGCGGCGACu -3'
miRNA:   3'- aUGCU-CCGCGGCCugucGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 84542 0.82 0.082044
Target:  5'- ----cGGCGUCGGGCGGCGCGGCGAg -3'
miRNA:   3'- augcuCCGCGGCCUGUCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 80651 0.81 0.095
Target:  5'- gGCGGcGGCGCCGGguccgucggucccGCGGCgGCGGCGACg -3'
miRNA:   3'- aUGCU-CCGCGGCC-------------UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 74535 0.8 0.113158
Target:  5'- gACGAGGUacaGCCaGGCGGcCGCGGCGACg -3'
miRNA:   3'- aUGCUCCG---CGGcCUGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 80863 0.77 0.174595
Target:  5'- cGCGGGGCucgguGUCGGGCGGUccGCGGCGGCc -3'
miRNA:   3'- aUGCUCCG-----CGGCCUGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 15118 0.77 0.178762
Target:  5'- gGCGAccGGCGCCGGACuGCGaCGGC-ACg -3'
miRNA:   3'- aUGCU--CCGCGGCCUGuCGC-GCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 95306 0.77 0.187362
Target:  5'- gACGAGGCGCCGaaGCAGCGgCgGGCGAa -3'
miRNA:   3'- aUGCUCCGCGGCc-UGUCGC-G-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 4442 0.76 0.196324
Target:  5'- gGCGGGGUGCCGGGC-GCGgGGguCGGCg -3'
miRNA:   3'- aUGCUCCGCGGCCUGuCGCgCC--GCUG- -5'
8984 5' -62.9 NC_002512.2 + 121926 0.76 0.210468
Target:  5'- gACGAGGCGgcggcggucCCGGACc-CGCGGCGAUg -3'
miRNA:   3'- aUGCUCCGC---------GGCCUGucGCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.