miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 133989 0.65 0.719283
Target:  5'- aGCuGAGGaCGauccaccacaucccCCGGACGaagaucuGCGCGGUGGCg -3'
miRNA:   3'- aUG-CUCC-GC--------------GGCCUGU-------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 226737 0.65 0.720211
Target:  5'- gACGAcGGCgggaccgggcuccgGCCGGACGaCGCGGagGGCg -3'
miRNA:   3'- aUGCU-CCG--------------CGGCCUGUcGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 133900 0.66 0.698711
Target:  5'- gGCGgucccGGGCGCUGGccuaccuccugcuguACGGCGgCGGCccGACg -3'
miRNA:   3'- aUGC-----UCCGCGGCC---------------UGUCGC-GCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 104929 0.66 0.666479
Target:  5'- cGCGAcGGCcuccucguCCGGcguCGGCGCGGCGcCg -3'
miRNA:   3'- aUGCU-CCGc-------GGCCu--GUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 46059 0.66 0.685491
Target:  5'- aGCGcaGGGCGUCGaGCAGCGUGuGUGGg -3'
miRNA:   3'- aUGC--UCCGCGGCcUGUCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 36768 0.66 0.676001
Target:  5'- gACGucGgGCCGGACgcagcucuccGGCGCGGaGAUg -3'
miRNA:   3'- aUGCucCgCGGCCUG----------UCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 40660 0.66 0.684543
Target:  5'- cGCGAcGGCGaCGGACggauccgacgucgAGCaugccgcccGCGGCGACc -3'
miRNA:   3'- aUGCU-CCGCgGCCUG-------------UCG---------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 91008 0.66 0.70341
Target:  5'- --aGGGGCGUCGGAggcccauCAGCGggauaCGGgGACu -3'
miRNA:   3'- augCUCCGCGGCCU-------GUCGC-----GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 30595 0.66 0.692111
Target:  5'- gAgGAGGCcaccaaCCGGAgGGCGCGGauguucgggccgccCGACa -3'
miRNA:   3'- aUgCUCCGc-----GGCCUgUCGCGCC--------------GCUG- -5'
8984 5' -62.9 NC_002512.2 + 126508 0.66 0.685491
Target:  5'- cGCGA-GCGCCucGGCGGCucCGGCGGCc -3'
miRNA:   3'- aUGCUcCGCGGc-CUGUCGc-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 81180 0.66 0.676001
Target:  5'- -uUGAuGGCGCCGacGAUccgGGCgaagGCGGCGACg -3'
miRNA:   3'- auGCU-CCGCGGC--CUG---UCG----CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 112773 0.66 0.67505
Target:  5'- cGCGGGGCcccgugccgcuguGCCGGGucCAGgGCGGCc-- -3'
miRNA:   3'- aUGCUCCG-------------CGGCCU--GUCgCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 99571 0.66 0.676001
Target:  5'- -uCGGGGgGUacGACGGCGUGGCGcACa -3'
miRNA:   3'- auGCUCCgCGgcCUGUCGCGCCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 34039 0.66 0.685491
Target:  5'- cGCGA-GCGCCGGuugcucgaGGCGUgccccacgacGGCGGCg -3'
miRNA:   3'- aUGCUcCGCGGCCug------UCGCG----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 10950 0.66 0.676001
Target:  5'- gACGAGGaCGCCGGcGCccucgggccaGGCaGCGGC-ACg -3'
miRNA:   3'- aUGCUCC-GCGGCC-UG----------UCG-CGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 10678 0.66 0.666479
Target:  5'- -cCGAGGCcgGCCcGGCAGUGCaGCGGg -3'
miRNA:   3'- auGCUCCG--CGGcCUGUCGCGcCGCUg -5'
8984 5' -62.9 NC_002512.2 + 62580 0.66 0.676001
Target:  5'- -uCGAGGCGCaCGGggucgcggaACAGguCGCgGGUGACg -3'
miRNA:   3'- auGCUCCGCG-GCC---------UGUC--GCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 85263 0.66 0.666479
Target:  5'- cGCGuGGcCGCCacGucCAGCGCGGCG-Cg -3'
miRNA:   3'- aUGCuCC-GCGG--CcuGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 137225 0.66 0.684543
Target:  5'- gGCGcGGGCGgccgucCCGGAuccgcgcggguccCGGCGCcGGCGGCc -3'
miRNA:   3'- aUGC-UCCGC------GGCCU-------------GUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96699 0.66 0.685491
Target:  5'- cGCcgcGUGCCGGACuGCGUGGUGGu -3'
miRNA:   3'- aUGcucCGCGGCCUGuCGCGCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.