miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 191478 1.06 0.001678
Target:  5'- gUACGAGGCGCCGGACAGCGCGGCGACc -3'
miRNA:   3'- -AUGCUCCGCGGCCUGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 74186 0.89 0.029009
Target:  5'- --gGAGGCGCCGGcACAGgGCGGCGACg -3'
miRNA:   3'- augCUCCGCGGCC-UGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 84542 0.82 0.082044
Target:  5'- ----cGGCGUCGGGCGGCGCGGCGAg -3'
miRNA:   3'- augcuCCGCGGCCUGUCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 80651 0.81 0.095
Target:  5'- gGCGGcGGCGCCGGguccgucggucccGCGGCgGCGGCGACg -3'
miRNA:   3'- aUGCU-CCGCGGCC-------------UGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 166454 0.8 0.110417
Target:  5'- gGCGAcGGCGCCGGGCucgAGgGCGGgGACg -3'
miRNA:   3'- aUGCU-CCGCGGCCUG---UCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 74535 0.8 0.113158
Target:  5'- gACGAGGUacaGCCaGGCGGcCGCGGCGACg -3'
miRNA:   3'- aUGCUCCG---CGGcCUGUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 153174 0.8 0.118832
Target:  5'- cUACGGGGCGgCGGGCAGCGguggggagGGCGGCa -3'
miRNA:   3'- -AUGCUCCGCgGCCUGUCGCg-------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 201778 0.79 0.130983
Target:  5'- gACGAGGgugagaGCgCGGACGGgGCGGCGACc -3'
miRNA:   3'- aUGCUCCg-----CG-GCCUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 109841 0.78 0.144272
Target:  5'- cGCcGGGCGUCGGGgacCGGCGUGGCGGCg -3'
miRNA:   3'- aUGcUCCGCGGCCU---GUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96209 0.78 0.144272
Target:  5'- cGCGAGGUcggccacggcgGCCGcGGCGGCgGCGGCGACc -3'
miRNA:   3'- aUGCUCCG-----------CGGC-CUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 112919 0.78 0.147781
Target:  5'- gACGGGGCGUCGG-CGGCcCGGUGGCg -3'
miRNA:   3'- aUGCUCCGCGGCCuGUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 157151 0.78 0.151369
Target:  5'- -cCGGGGCgggcggcggGCCGGGCGGCGUGgGCGGCg -3'
miRNA:   3'- auGCUCCG---------CGGCCUGUCGCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 101431 0.78 0.155035
Target:  5'- --aGcGGCgGCCGG-CGGCGCGGCGACg -3'
miRNA:   3'- augCuCCG-CGGCCuGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 188630 0.78 0.158781
Target:  5'- aGCGcucgggccgcaaGGGCGCCGG-CGGCgGCGGCGGCc -3'
miRNA:   3'- aUGC------------UCCGCGGCCuGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 89006 0.78 0.162609
Target:  5'- cGCGGGGaCGUCGGGCAGCGCGauccgaGCGAa -3'
miRNA:   3'- aUGCUCC-GCGGCCUGUCGCGC------CGCUg -5'
8984 5' -62.9 NC_002512.2 + 227220 0.77 0.170515
Target:  5'- cAgGAGGCGgCGGACcgggaGGCGCGGCgGACg -3'
miRNA:   3'- aUgCUCCGCgGCCUG-----UCGCGCCG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 80863 0.77 0.174595
Target:  5'- cGCGGGGCucgguGUCGGGCGGUccGCGGCGGCc -3'
miRNA:   3'- aUGCUCCG-----CGGCCUGUCG--CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 15118 0.77 0.178762
Target:  5'- gGCGAccGGCGCCGGACuGCGaCGGC-ACg -3'
miRNA:   3'- aUGCU--CCGCGGCCUGuCGC-GCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 95306 0.77 0.187362
Target:  5'- gACGAGGCGCCGaaGCAGCGgCgGGCGAa -3'
miRNA:   3'- aUGCUCCGCGGCc-UGUCGC-G-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 91869 0.76 0.191797
Target:  5'- -cCGAGGcCGCCGucCGGCGCGgGCGGCg -3'
miRNA:   3'- auGCUCC-GCGGCcuGUCGCGC-CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.