Results 21 - 40 of 379 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8984 | 5' | -62.9 | NC_002512.2 | + | 4442 | 0.76 | 0.196324 |
Target: 5'- gGCGGGGUGCCGGGC-GCGgGGguCGGCg -3' miRNA: 3'- aUGCUCCGCGGCCUGuCGCgCC--GCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 228413 | 0.76 | 0.196324 |
Target: 5'- gACGGGGCGCUGGGgGGCGgGgGCGGg -3' miRNA: 3'- aUGCUCCGCGGCCUgUCGCgC-CGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 184536 | 0.76 | 0.200944 |
Target: 5'- cGCGGGGUcaGCCGG-CGGCGCGGgcCGGCg -3' miRNA: 3'- aUGCUCCG--CGGCCuGUCGCGCC--GCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 221394 | 0.76 | 0.210468 |
Target: 5'- gGCGGGGCG-CGGGCGGgGaGGCGGCg -3' miRNA: 3'- aUGCUCCGCgGCCUGUCgCgCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 121926 | 0.76 | 0.210468 |
Target: 5'- gACGAGGCGgcggcggucCCGGACc-CGCGGCGAUg -3' miRNA: 3'- aUGCUCCGC---------GGCCUGucGCGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 113147 | 0.75 | 0.235452 |
Target: 5'- cGCGGGGCGCCGGccucgccGCGGCcggGCGG-GACg -3' miRNA: 3'- aUGCUCCGCGGCC-------UGUCG---CGCCgCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 101634 | 0.75 | 0.241392 |
Target: 5'- cGCGAGuCGCCgcucgaGGGgAGCGCGGCGGCc -3' miRNA: 3'- aUGCUCcGCGG------CCUgUCGCGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 45424 | 0.75 | 0.241392 |
Target: 5'- gACGGcGGCGCCGGc---CGCGGCGACu -3' miRNA: 3'- aUGCU-CCGCGGCCugucGCGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 126767 | 0.75 | 0.241393 |
Target: 5'- -uCGGGGCG-CGG-CGGCgGCGGCGACg -3' miRNA: 3'- auGCUCCGCgGCCuGUCG-CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 194916 | 0.75 | 0.246901 |
Target: 5'- cGCGAGGCccaGCCGGACccGGuCGCGGCcGCu -3' miRNA: 3'- aUGCUCCG---CGGCCUG--UC-GCGCCGcUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 86441 | 0.75 | 0.246901 |
Target: 5'- gACGGGGCGCgGGACGGgggacgggugcCGCGuGUGACu -3' miRNA: 3'- aUGCUCCGCGgCCUGUC-----------GCGC-CGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 4873 | 0.75 | 0.252513 |
Target: 5'- cGCGugcGGCGCCGGcUGGaggaGCGGCGACg -3' miRNA: 3'- aUGCu--CCGCGGCCuGUCg---CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 45520 | 0.75 | 0.252513 |
Target: 5'- aGCGcccGCGgCGGGCGGCgGCGGCGACu -3' miRNA: 3'- aUGCuc-CGCgGCCUGUCG-CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 131994 | 0.74 | 0.258229 |
Target: 5'- cGCGugggccgccccGGGCGCCGGGgGGaccucgGCGGCGACg -3' miRNA: 3'- aUGC-----------UCCGCGGCCUgUCg-----CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 120609 | 0.74 | 0.264051 |
Target: 5'- aGCG-GGCGCCGGugAgaGCGggaGGCGGCg -3' miRNA: 3'- aUGCuCCGCGGCCugU--CGCg--CCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 75270 | 0.74 | 0.276013 |
Target: 5'- cACGAuGGCGgCGacGGCGGCgGCGGCGGCg -3' miRNA: 3'- aUGCU-CCGCgGC--CUGUCG-CGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 161840 | 0.74 | 0.276013 |
Target: 5'- gACGAGGCuuCCGGACacGGCGuCGGCGGu -3' miRNA: 3'- aUGCUCCGc-GGCCUG--UCGC-GCCGCUg -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 107721 | 0.74 | 0.276013 |
Target: 5'- gGCGcAGGuCGCagaGGugGGUGCGGUGGCa -3' miRNA: 3'- aUGC-UCC-GCGg--CCugUCGCGCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 57859 | 0.74 | 0.276013 |
Target: 5'- -gUGGGGCgcaugcugccgGCCGGAcCGGCGaCGGCGGCg -3' miRNA: 3'- auGCUCCG-----------CGGCCU-GUCGC-GCCGCUG- -5' |
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8984 | 5' | -62.9 | NC_002512.2 | + | 122027 | 0.74 | 0.282155 |
Target: 5'- gGCGGaucGGCGCUcgcgcacgcccgGGGCGGCGuCGGCGGCu -3' miRNA: 3'- aUGCU---CCGCGG------------CCUGUCGC-GCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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