miRNA display CGI


Results 21 - 40 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 99898 0.66 0.704348
Target:  5'- cACGcGGCGCCGc-CGGCGCucccGGCGGu -3'
miRNA:   3'- aUGCuCCGCGGCcuGUCGCG----CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 74400 0.66 0.704348
Target:  5'- cAUGGGG-GuCCGGACGGUgccgacgaacucGCGGuCGACg -3'
miRNA:   3'- aUGCUCCgC-GGCCUGUCG------------CGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 115574 0.66 0.704348
Target:  5'- aGCGuGGCGCUGGAgCAccuGCGCcgGGUGuACa -3'
miRNA:   3'- aUGCuCCGCGGCCU-GU---CGCG--CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 39721 0.66 0.704348
Target:  5'- gACGAGGauuUCGGAU-GCGUGGaCGACg -3'
miRNA:   3'- aUGCUCCgc-GGCCUGuCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 90933 0.66 0.704348
Target:  5'- gACGGGcGCGaCCgGGGCGuGCGUGggcGCGACg -3'
miRNA:   3'- aUGCUC-CGC-GG-CCUGU-CGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 11455 0.66 0.704348
Target:  5'- gACGGGG-GCCGGGgaaGGgGCGGaGACc -3'
miRNA:   3'- aUGCUCCgCGGCCUg--UCgCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 85563 0.66 0.704348
Target:  5'- gAgGAGGCGCgGGA--GCGgGaGCGGCc -3'
miRNA:   3'- aUgCUCCGCGgCCUguCGCgC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 8790 0.66 0.704348
Target:  5'- gAgGAGGCGCCGGAgGGCGUc----- -3'
miRNA:   3'- aUgCUCCGCGGCCUgUCGCGccgcug -5'
8984 5' -62.9 NC_002512.2 + 89670 0.66 0.704348
Target:  5'- gACGcGGUGCgaaGGCGGCGgGGCGAg -3'
miRNA:   3'- aUGCuCCGCGgc-CUGUCGCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 139013 0.66 0.704348
Target:  5'- aACaGGGgGuCCGacGGCGGCGCGGaCGGCu -3'
miRNA:   3'- aUGcUCCgC-GGC--CUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 190541 0.66 0.70341
Target:  5'- gGCGAGGgaccggcUGCUGGGCAcCGaGGCGGCc -3'
miRNA:   3'- aUGCUCC-------GCGGCCUGUcGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 91008 0.66 0.70341
Target:  5'- --aGGGGCGUCGGAggcccauCAGCGggauaCGGgGACu -3'
miRNA:   3'- augCUCCGCGGCCU-------GUCGC-----GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 133900 0.66 0.698711
Target:  5'- gGCGgucccGGGCGCUGGccuaccuccugcuguACGGCGgCGGCccGACg -3'
miRNA:   3'- aUGC-----UCCGCGGCC---------------UGUCGC-GCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 185168 0.66 0.695885
Target:  5'- gGCGcGGCGuCCaGGACuucuucuccgagaaCGCGGCGGCg -3'
miRNA:   3'- aUGCuCCGC-GG-CCUGuc------------GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 143689 0.66 0.694942
Target:  5'- gGCGGGGUGUCGGGCA-CGgagGGcCGACc -3'
miRNA:   3'- aUGCUCCGCGGCCUGUcGCg--CC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 221276 0.66 0.694942
Target:  5'- cGCGGGGCGCgUGGAgGGgGgGGaGGCc -3'
miRNA:   3'- aUGCUCCGCG-GCCUgUCgCgCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 186680 0.66 0.694942
Target:  5'- gUGCGAuacGGCGuCCGGAacuCGGCcuucgucuGCGGCGGg -3'
miRNA:   3'- -AUGCU---CCGC-GGCCU---GUCG--------CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 30595 0.66 0.692111
Target:  5'- gAgGAGGCcaccaaCCGGAgGGCGCGGauguucgggccgccCGACa -3'
miRNA:   3'- aUgCUCCGc-----GGCCUgUCGCGCC--------------GCUG- -5'
8984 5' -62.9 NC_002512.2 + 126508 0.66 0.685491
Target:  5'- cGCGA-GCGCCucGGCGGCucCGGCGGCc -3'
miRNA:   3'- aUGCUcCGCGGc-CUGUCGc-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96699 0.66 0.685491
Target:  5'- cGCcgcGUGCCGGACuGCGUGGUGGu -3'
miRNA:   3'- aUGcucCGCGGCCUGuCGCGCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.