miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 126508 0.66 0.685491
Target:  5'- cGCGA-GCGCCucGGCGGCucCGGCGGCc -3'
miRNA:   3'- aUGCUcCGCGGc-CUGUCGc-GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 96699 0.66 0.685491
Target:  5'- cGCcgcGUGCCGGACuGCGUGGUGGu -3'
miRNA:   3'- aUGcucCGCGGCCUGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 117698 0.66 0.685491
Target:  5'- cUGCGuGGCGCaccugCGGcgGguGCGCaGCGACa -3'
miRNA:   3'- -AUGCuCCGCG-----GCC--UguCGCGcCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198659 0.66 0.685491
Target:  5'- cACGAaaCGCa--GCAGCGUGGCGACg -3'
miRNA:   3'- aUGCUccGCGgccUGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 128486 0.66 0.685491
Target:  5'- aGCGAcagcGGuCGgCGGACAGCGCccgGGUGGg -3'
miRNA:   3'- aUGCU----CC-GCgGCCUGUCGCG---CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 200806 0.66 0.685491
Target:  5'- gACGAGGCGggacgcgacggcaUGGACgcgaaggucagcgggGGCGCGGCG-Cg -3'
miRNA:   3'- aUGCUCCGCg------------GCCUG---------------UCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 219705 0.66 0.685491
Target:  5'- aGCGucGGCGCUcgGGGC-GCGagaGGCGGCc -3'
miRNA:   3'- aUGCu-CCGCGG--CCUGuCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 34039 0.66 0.685491
Target:  5'- cGCGA-GCGCCGGuugcucgaGGCGUgccccacgacGGCGGCg -3'
miRNA:   3'- aUGCUcCGCGGCCug------UCGCG----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 137225 0.66 0.684543
Target:  5'- gGCGcGGGCGgccgucCCGGAuccgcgcggguccCGGCGCcGGCGGCc -3'
miRNA:   3'- aUGC-UCCGC------GGCCU-------------GUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 228554 0.66 0.684543
Target:  5'- gGCGGacGGCaGCCGGACGcuuccuuaccGCGgucguguCGGCGGCa -3'
miRNA:   3'- aUGCU--CCG-CGGCCUGU----------CGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 40660 0.66 0.684543
Target:  5'- cGCGAcGGCGaCGGACggauccgacgucgAGCaugccgcccGCGGCGACc -3'
miRNA:   3'- aUGCU-CCGCgGCCUG-------------UCG---------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 190927 0.66 0.68075
Target:  5'- gACGAGGCagcggaaccagacCCGGGCGcacgcgggcgcccGcCGCGGCGGCc -3'
miRNA:   3'- aUGCUCCGc------------GGCCUGU-------------C-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 189581 0.66 0.676001
Target:  5'- gACcGGGcCGCCGGguccucgggacgACGuucguGCGCGGCGGCc -3'
miRNA:   3'- aUGcUCC-GCGGCC------------UGU-----CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 161687 0.66 0.676001
Target:  5'- gACGuguGGCGCgUGGaagauggagacGCGGC-CGGCGACg -3'
miRNA:   3'- aUGCu--CCGCG-GCC-----------UGUCGcGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 202515 0.66 0.676001
Target:  5'- gGCgGAGGCGgaGG-CGGCGgCGGgGGCg -3'
miRNA:   3'- aUG-CUCCGCggCCuGUCGC-GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 81180 0.66 0.676001
Target:  5'- -uUGAuGGCGCCGacGAUccgGGCgaagGCGGCGACg -3'
miRNA:   3'- auGCU-CCGCGGC--CUG---UCG----CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 36768 0.66 0.676001
Target:  5'- gACGucGgGCCGGACgcagcucuccGGCGCGGaGAUg -3'
miRNA:   3'- aUGCucCgCGGCCUG----------UCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 99571 0.66 0.676001
Target:  5'- -uCGGGGgGUacGACGGCGUGGCGcACa -3'
miRNA:   3'- auGCUCCgCGgcCUGUCGCGCCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 62580 0.66 0.676001
Target:  5'- -uCGAGGCGCaCGGggucgcggaACAGguCGCgGGUGACg -3'
miRNA:   3'- auGCUCCGCG-GCC---------UGUC--GCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 10950 0.66 0.676001
Target:  5'- gACGAGGaCGCCGGcGCccucgggccaGGCaGCGGC-ACg -3'
miRNA:   3'- aUGCUCC-GCGGCC-UG----------UCG-CGCCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.