miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 226737 0.65 0.720211
Target:  5'- gACGAcGGCgggaccgggcuccgGCCGGACGaCGCGGagGGCg -3'
miRNA:   3'- aUGCU-CCG--------------CGGCCUGUcGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 39721 0.66 0.704348
Target:  5'- gACGAGGauuUCGGAU-GCGUGGaCGACg -3'
miRNA:   3'- aUGCUCCgc-GGCCUGuCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 190541 0.66 0.70341
Target:  5'- gGCGAGGgaccggcUGCUGGGCAcCGaGGCGGCc -3'
miRNA:   3'- aUGCUCC-------GCGGCCUGUcGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 191478 1.06 0.001678
Target:  5'- gUACGAGGCGCCGGACAGCGCGGCGACc -3'
miRNA:   3'- -AUGCUCCGCGGCCUGUCGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 165397 0.66 0.7137
Target:  5'- -uCGGGGCGCUcaugguccaGGAgGGC-CGGCGGg -3'
miRNA:   3'- auGCUCCGCGG---------CCUgUCGcGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 101776 0.66 0.7137
Target:  5'- gGCGAgacGGCGCCGucCu-CGCGGCGGa -3'
miRNA:   3'- aUGCU---CCGCGGCcuGucGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 149418 0.66 0.712767
Target:  5'- cGCGAGGgGaCCGcGGCgggggcgGGCGCGGgGGg -3'
miRNA:   3'- aUGCUCCgC-GGC-CUG-------UCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 103670 0.66 0.712767
Target:  5'- cACGA-GCGCCucgacgucgcagaGGGCGGCggacGCGGCGGg -3'
miRNA:   3'- aUGCUcCGCGG-------------CCUGUCG----CGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 178691 0.66 0.704348
Target:  5'- -cCGAGGC-CC--GCAGCGCGGCcGCc -3'
miRNA:   3'- auGCUCCGcGGccUGUCGCGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 99898 0.66 0.704348
Target:  5'- cACGcGGCGCCGc-CGGCGCucccGGCGGu -3'
miRNA:   3'- aUGCuCCGCGGCcuGUCGCG----CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 127670 0.66 0.704348
Target:  5'- -uCGAGG-GCCGcucCGGcCGCGGCGAUc -3'
miRNA:   3'- auGCUCCgCGGCcu-GUC-GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 131276 0.66 0.704348
Target:  5'- aGCG-GGUugaccuucgacgGCUGGacguGCAGCGCGGaCGACc -3'
miRNA:   3'- aUGCuCCG------------CGGCC----UGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 133989 0.65 0.719283
Target:  5'- aGCuGAGGaCGauccaccacaucccCCGGACGaagaucuGCGCGGUGGCg -3'
miRNA:   3'- aUG-CUCC-GC--------------GGCCUGU-------CGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 116171 0.66 0.704348
Target:  5'- cGCu-GGCGCCGGGCGaguuccacGCGCuGCGGg -3'
miRNA:   3'- aUGcuCCGCGGCCUGU--------CGCGcCGCUg -5'
8984 5' -62.9 NC_002512.2 + 220304 0.66 0.7137
Target:  5'- -cCGAGcCGCCGGGgGGC-CGGgGGCc -3'
miRNA:   3'- auGCUCcGCGGCCUgUCGcGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 219026 0.66 0.708095
Target:  5'- cUGCGAcGUGCUGGucuacgucgucggccGCGGCGCGG-GGCu -3'
miRNA:   3'- -AUGCUcCGCGGCC---------------UGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 115574 0.66 0.704348
Target:  5'- aGCGuGGCGCUGGAgCAccuGCGCcgGGUGuACa -3'
miRNA:   3'- aUGCuCCGCGGCCU-GU---CGCG--CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 90933 0.66 0.704348
Target:  5'- gACGGGcGCGaCCgGGGCGuGCGUGggcGCGACg -3'
miRNA:   3'- aUGCUC-CGC-GG-CCUGU-CGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 198018 0.66 0.7137
Target:  5'- gACgGGGGCGagGGAC-GCGCGcGCGAg -3'
miRNA:   3'- aUG-CUCCGCggCCUGuCGCGC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 208888 0.66 0.7137
Target:  5'- cGgGAGGgGCCGGGaauccccGCGCGGgaGGCu -3'
miRNA:   3'- aUgCUCCgCGGCCUgu-----CGCGCCg-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.