miRNA display CGI


Results 1 - 20 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 229603 0.68 0.589995
Target:  5'- --aGGGGC-CCGGGCGGagagggaGCGGgGACc -3'
miRNA:   3'- augCUCCGcGGCCUGUCg------CGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 229555 0.73 0.294763
Target:  5'- gGCGGGGCGCCGG-CGGaggaGCGcGCGcCg -3'
miRNA:   3'- aUGCUCCGCGGCCuGUCg---CGC-CGCuG- -5'
8984 5' -62.9 NC_002512.2 + 229477 0.67 0.656933
Target:  5'- cGCG-GGCGCgaGGA-GGCGagaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGg-CCUgUCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 228554 0.66 0.684543
Target:  5'- gGCGGacGGCaGCCGGACGcuuccuuaccGCGgucguguCGGCGGCa -3'
miRNA:   3'- aUGCU--CCG-CGGCCUGU----------CGC-------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 228413 0.76 0.196324
Target:  5'- gACGGGGCGCUGGGgGGCGgGgGCGGg -3'
miRNA:   3'- aUGCUCCGCGGCCUgUCGCgC-CGCUg -5'
8984 5' -62.9 NC_002512.2 + 228300 0.68 0.599525
Target:  5'- gGCGA-GCGCCGGAgaAGCaGCGGacauCGACu -3'
miRNA:   3'- aUGCUcCGCGGCCUg-UCG-CGCC----GCUG- -5'
8984 5' -62.9 NC_002512.2 + 228245 0.69 0.497023
Target:  5'- gGCGAacGUGCCGGAC-GCgGgGGCGACu -3'
miRNA:   3'- aUGCUc-CGCGGCCUGuCG-CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 228030 0.72 0.335199
Target:  5'- --aGGGGCGaCCGGACGGCggcgagacgcccGCGGaCGGCu -3'
miRNA:   3'- augCUCCGC-GGCCUGUCG------------CGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 227998 0.69 0.533566
Target:  5'- -cCGAGGgccggaGCCGGACGGgaCGCGG-GACg -3'
miRNA:   3'- auGCUCCg-----CGGCCUGUC--GCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 227945 0.68 0.552198
Target:  5'- gACGAGGCG--GGGgAGCGCGGgGGa -3'
miRNA:   3'- aUGCUCCGCggCCUgUCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 227673 0.68 0.579543
Target:  5'- aGCGGcGGCGCCGc-CGGCGaccgagacgacgaCGGCGGCg -3'
miRNA:   3'- aUGCU-CCGCGGCcuGUCGC-------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 227621 0.71 0.419379
Target:  5'- gGCG-GGCGgCGG-CGGCGaggucaGGCGACg -3'
miRNA:   3'- aUGCuCCGCgGCCuGUCGCg-----CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 227220 0.77 0.170515
Target:  5'- cAgGAGGCGgCGGACcgggaGGCGCGGCgGACg -3'
miRNA:   3'- aUgCUCCGCgGCCUG-----UCGCGCCG-CUG- -5'
8984 5' -62.9 NC_002512.2 + 226737 0.65 0.720211
Target:  5'- gACGAcGGCgggaccgggcuccgGCCGGACGaCGCGGagGGCg -3'
miRNA:   3'- aUGCU-CCG--------------CGGCCUGUcGCGCCg-CUG- -5'
8984 5' -62.9 NC_002512.2 + 226735 0.67 0.628218
Target:  5'- aGCGAGGCugucCCGGAgaCGGCGgaGGCGuGCg -3'
miRNA:   3'- aUGCUCCGc---GGCCU--GUCGCg-CCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 226684 0.7 0.479176
Target:  5'- -cUGA-GCGCCGGGCcgucgccCGCGGCGGCg -3'
miRNA:   3'- auGCUcCGCGGCCUGuc-----GCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 225785 0.71 0.402338
Target:  5'- -cCGAGGCugcgccgGCCGGGCcGCG-GGCGGCc -3'
miRNA:   3'- auGCUCCG-------CGGCCUGuCGCgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 224955 0.71 0.408778
Target:  5'- cGCucGGCuccgccgucuacccGCUGGGCGGCgGCGGCGGCg -3'
miRNA:   3'- aUGcuCCG--------------CGGCCUGUCG-CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 224073 0.68 0.599525
Target:  5'- -uCGAcGcCGCCGaACGGgGCGGCGGCg -3'
miRNA:   3'- auGCUcC-GCGGCcUGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 223898 0.67 0.628218
Target:  5'- gAgGAGGaGCgGGAgCGGCGCgGGCGAg -3'
miRNA:   3'- aUgCUCCgCGgCCU-GUCGCG-CCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.