miRNA display CGI


Results 61 - 80 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 99571 0.66 0.676001
Target:  5'- -uCGGGGgGUacGACGGCGUGGCGcACa -3'
miRNA:   3'- auGCUCCgCGgcCUGUCGCGCCGC-UG- -5'
8984 5' -62.9 NC_002512.2 + 10950 0.66 0.676001
Target:  5'- gACGAGGaCGCCGGcGCccucgggccaGGCaGCGGC-ACg -3'
miRNA:   3'- aUGCUCC-GCGGCC-UG----------UCG-CGCCGcUG- -5'
8984 5' -62.9 NC_002512.2 + 112773 0.66 0.67505
Target:  5'- cGCGGGGCcccgugccgcuguGCCGGGucCAGgGCGGCc-- -3'
miRNA:   3'- aUGCUCCG-------------CGGCCU--GUCgCGCCGcug -5'
8984 5' -62.9 NC_002512.2 + 188782 0.66 0.67505
Target:  5'- gGCGGcGGCuCCGGccucgGCGGCcccgaucGCGGCGGCu -3'
miRNA:   3'- aUGCU-CCGcGGCC-----UGUCG-------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 156476 0.66 0.67505
Target:  5'- --gGGGGCGgCGGGCucGGCGggcugggcggacaCGGCGGCc -3'
miRNA:   3'- augCUCCGCgGCCUG--UCGC-------------GCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 103042 0.66 0.666479
Target:  5'- gACGAcGGCGacgaCCGcGACgAGCGCGaCGACg -3'
miRNA:   3'- aUGCU-CCGC----GGC-CUG-UCGCGCcGCUG- -5'
8984 5' -62.9 NC_002512.2 + 85263 0.66 0.666479
Target:  5'- cGCGuGGcCGCCacGucCAGCGCGGCG-Cg -3'
miRNA:   3'- aUGCuCC-GCGG--CcuGUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 10283 0.66 0.666479
Target:  5'- -cCGAGaaGCCGGGCAGCGaguCGGCcaccagGACg -3'
miRNA:   3'- auGCUCcgCGGCCUGUCGC---GCCG------CUG- -5'
8984 5' -62.9 NC_002512.2 + 114324 0.66 0.666479
Target:  5'- gACGGGaGCGUUcuuGACGcGCGCGGCGGg -3'
miRNA:   3'- aUGCUC-CGCGGc--CUGU-CGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 106767 0.66 0.666479
Target:  5'- cGgGAcGGcCGCC-GACGGCGCGG-GACg -3'
miRNA:   3'- aUgCU-CC-GCGGcCUGUCGCGCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 215299 0.66 0.666479
Target:  5'- cUACGGGGagaCGGGC--UGCGGCGACu -3'
miRNA:   3'- -AUGCUCCgcgGCCUGucGCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 182999 0.66 0.666479
Target:  5'- -uUGAGGaaaCGgCGGAU-GCGCGGCGAg -3'
miRNA:   3'- auGCUCC---GCgGCCUGuCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 104929 0.66 0.666479
Target:  5'- cGCGAcGGCcuccucguCCGGcguCGGCGCGGCGcCg -3'
miRNA:   3'- aUGCU-CCGc-------GGCCu--GUCGCGCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 184624 0.66 0.666479
Target:  5'- cGCGAGccccCGCCGG-CGGcCGaCGGCGAg -3'
miRNA:   3'- aUGCUCc---GCGGCCuGUC-GC-GCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 10678 0.66 0.666479
Target:  5'- -cCGAGGCcgGCCcGGCAGUGCaGCGGg -3'
miRNA:   3'- auGCUCCG--CGGcCUGUCGCGcCGCUg -5'
8984 5' -62.9 NC_002512.2 + 168141 0.66 0.666479
Target:  5'- gGCGAGGgGCUGGGgGuGgGgGGCGGa -3'
miRNA:   3'- aUGCUCCgCGGCCUgU-CgCgCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 229477 0.67 0.656933
Target:  5'- cGCG-GGCGCgaGGA-GGCGagaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGg-CCUgUCGCg--CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 164430 0.67 0.656933
Target:  5'- cAUGcAGGuCGCCGGGaagccgcuCGGCGCccucggcgggGGCGACg -3'
miRNA:   3'- aUGC-UCC-GCGGCCU--------GUCGCG----------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 112148 0.67 0.656933
Target:  5'- gACGAGGCGgUcGACGGCGagcCGGCG-Cu -3'
miRNA:   3'- aUGCUCCGCgGcCUGUCGC---GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 73 0.67 0.656933
Target:  5'- cGCG-GGCGCgaGGA-GGCGagaGGCGGCg -3'
miRNA:   3'- aUGCuCCGCGg-CCUgUCGCg--CCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.