miRNA display CGI


Results 41 - 60 of 379 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8984 5' -62.9 NC_002512.2 + 17041 0.7 0.467745
Target:  5'- --gGAGGgGaCGGACGGCGCccgcgcccaaccccGGCGGCg -3'
miRNA:   3'- augCUCCgCgGCCUGUCGCG--------------CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 18693 0.7 0.436008
Target:  5'- -uCGuGGGCGgCGGgcaccccgaGCAGgGCGGCGACg -3'
miRNA:   3'- auGC-UCCGCgGCC---------UGUCgCGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 19770 0.68 0.589995
Target:  5'- cGCG-GGCGCaGGGCAGgGCGuacuCGACg -3'
miRNA:   3'- aUGCuCCGCGgCCUGUCgCGCc---GCUG- -5'
8984 5' -62.9 NC_002512.2 + 21064 0.71 0.403139
Target:  5'- cGCGugaGGGCGCaCGGGCGGCggucccgcuccGgGGCGACc -3'
miRNA:   3'- aUGC---UCCGCG-GCCUGUCG-----------CgCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 22986 0.71 0.411209
Target:  5'- gGCGGGaCG-CGGGCGGCGCuGGUGACc -3'
miRNA:   3'- aUGCUCcGCgGCCUGUCGCG-CCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 23114 0.68 0.599525
Target:  5'- gAUGAucGCGCUGGACGaccccauguuccGCGCGgGCGGCa -3'
miRNA:   3'- aUGCUc-CGCGGCCUGU------------CGCGC-CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 23329 0.67 0.618643
Target:  5'- gGCGccccGGGcCGCCGGcgguguACgAGUGCGGCGAg -3'
miRNA:   3'- aUGC----UCC-GCGGCC------UG-UCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 24232 0.67 0.618643
Target:  5'- -cCGAGGCGUCGGGCccgcCGaCGGCGuCc -3'
miRNA:   3'- auGCUCCGCGGCCUGuc--GC-GCCGCuG- -5'
8984 5' -62.9 NC_002512.2 + 24282 0.68 0.589995
Target:  5'- gGCGAcGGCaucccGCgGGACAGCGgCGG-GGCg -3'
miRNA:   3'- aUGCU-CCG-----CGgCCUGUCGC-GCCgCUG- -5'
8984 5' -62.9 NC_002512.2 + 27598 0.7 0.444465
Target:  5'- gGCGGcacGGCGCCccGGucccACAGCGCGGagaGACg -3'
miRNA:   3'- aUGCU---CCGCGG--CC----UGUCGCGCCg--CUG- -5'
8984 5' -62.9 NC_002512.2 + 27974 0.68 0.589995
Target:  5'- gAUG-GGCgGCCGGGCgagauuccGGCGCGGgGAg -3'
miRNA:   3'- aUGCuCCG-CGGCCUG--------UCGCGCCgCUg -5'
8984 5' -62.9 NC_002512.2 + 28046 0.68 0.587141
Target:  5'- gGCGAGcUGCCGGccGCggaaggagcccccgGGCGCGGCGGa -3'
miRNA:   3'- aUGCUCcGCGGCC--UG--------------UCGCGCCGCUg -5'
8984 5' -62.9 NC_002512.2 + 28262 0.67 0.628218
Target:  5'- gUACGAcGGCGCCuaccgcuCGGCGCuGGCGGa -3'
miRNA:   3'- -AUGCU-CCGCGGccu----GUCGCG-CCGCUg -5'
8984 5' -62.9 NC_002512.2 + 29009 0.72 0.379541
Target:  5'- aACGAcGUGgUGGGCGGCGUGGuCGACg -3'
miRNA:   3'- aUGCUcCGCgGCCUGUCGCGCC-GCUG- -5'
8984 5' -62.9 NC_002512.2 + 29928 0.7 0.47037
Target:  5'- gGCGGGaGUgcauaacaucauGCUGGACAGCcggugaGCGGCGGCc -3'
miRNA:   3'- aUGCUC-CG------------CGGCCUGUCG------CGCCGCUG- -5'
8984 5' -62.9 NC_002512.2 + 30595 0.66 0.692111
Target:  5'- gAgGAGGCcaccaaCCGGAgGGCGCGGauguucgggccgccCGACa -3'
miRNA:   3'- aUgCUCCGc-----GGCCUgUCGCGCC--------------GCUG- -5'
8984 5' -62.9 NC_002512.2 + 30656 0.7 0.47037
Target:  5'- -uCGGGcuGCGCCGGaucuaccggGCGGCGCGGUcgGACg -3'
miRNA:   3'- auGCUC--CGCGGCC---------UGUCGCGCCG--CUG- -5'
8984 5' -62.9 NC_002512.2 + 31646 0.73 0.307805
Target:  5'- --gGAGGCcgucCCGGACGGCGCGggcGCGGCc -3'
miRNA:   3'- augCUCCGc---GGCCUGUCGCGC---CGCUG- -5'
8984 5' -62.9 NC_002512.2 + 31802 0.69 0.506059
Target:  5'- gACGGGGagaCGCCGG--GGCGCGGuCGAg -3'
miRNA:   3'- aUGCUCC---GCGGCCugUCGCGCC-GCUg -5'
8984 5' -62.9 NC_002512.2 + 32724 0.72 0.356887
Target:  5'- --aGAGGCGCgGGuggaagACGGcCGUGGCGACc -3'
miRNA:   3'- augCUCCGCGgCC------UGUC-GCGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.