Results 21 - 40 of 165 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8985 | 3' | -58.5 | NC_002512.2 | + | 10553 | 0.71 | 0.623881 |
Target: 5'- -cGGGCaGCCGgCgggCCACGCCGACGc -3' miRNA: 3'- gcUCCGcCGGCaGaa-GGUGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 143898 | 0.71 | 0.633611 |
Target: 5'- uCGAGGCuGUCGUCgUCCGagagggcgaacuCGCCGACGa -3' miRNA: 3'- -GCUCCGcCGGCAGaAGGU------------GUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 214457 | 0.71 | 0.633611 |
Target: 5'- gCGAGGacgaGGCCGUCUacugcuUCCAC-CgCGGCGu -3' miRNA: 3'- -GCUCCg---CCGGCAGA------AGGUGuG-GCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 83989 | 0.71 | 0.633611 |
Target: 5'- gCGGGGCGGUCGcgcagCUucaggUCCAgguCGCCGACGa -3' miRNA: 3'- -GCUCCGCCGGCa----GA-----AGGU---GUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 215648 | 0.71 | 0.637503 |
Target: 5'- uGGGGCugcgGGCCGUCaagaagugcuaccgcUUCCGuCACCGGCu -3' miRNA: 3'- gCUCCG----CCGGCAG---------------AAGGU-GUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 146115 | 0.71 | 0.64334 |
Target: 5'- gCGGcGGCGgcGCCGUCUUCUGCACCuGCc -3' miRNA: 3'- -GCU-CCGC--CGGCAGAAGGUGUGGcUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 222495 | 0.71 | 0.65306 |
Target: 5'- uGGcGGUGGCCGcCUUCUGCGCCuGGCc -3' miRNA: 3'- gCU-CCGCCGGCaGAAGGUGUGG-CUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 226096 | 0.71 | 0.67245 |
Target: 5'- gGAGGCGucGCCGUCUucaUCUGCugCGuCAg -3' miRNA: 3'- gCUCCGC--CGGCAGA---AGGUGugGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 195137 | 0.71 | 0.67245 |
Target: 5'- aGAGGCGG-UGUCgcgacaGCACCGACAc -3' miRNA: 3'- gCUCCGCCgGCAGaagg--UGUGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 209032 | 0.7 | 0.682104 |
Target: 5'- gCGGGGCGGCCG-CgUCCcggaGCGauuCCGACGg -3' miRNA: 3'- -GCUCCGCCGGCaGaAGG----UGU---GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 189760 | 0.7 | 0.682104 |
Target: 5'- uCGAGGCGGgggacaaaauCCGUCcUCC-CGCCGuACGa -3' miRNA: 3'- -GCUCCGCC----------GGCAGaAGGuGUGGC-UGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 135325 | 0.7 | 0.69172 |
Target: 5'- cCGAGGuCGG-CGUCagCCGCGCCGGg- -3' miRNA: 3'- -GCUCC-GCCgGCAGaaGGUGUGGCUgu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 65426 | 0.7 | 0.69172 |
Target: 5'- -cGGGCGGUCGUCgcCCcCGCCGAgGg -3' miRNA: 3'- gcUCCGCCGGCAGaaGGuGUGGCUgU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 79940 | 0.7 | 0.69172 |
Target: 5'- cCGAGGCGGCgCGggggUCCGCcuGCCGuCGg -3' miRNA: 3'- -GCUCCGCCG-GCaga-AGGUG--UGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 69081 | 0.7 | 0.69268 |
Target: 5'- cCGGGGCGGCUGguacugcugccguggCUgcugCUGCGCCGGCc -3' miRNA: 3'- -GCUCCGCCGGCa--------------GAa---GGUGUGGCUGu -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 220388 | 0.7 | 0.701292 |
Target: 5'- uGGGGcCGGCCGUCgUCUAC-CCGcCGc -3' miRNA: 3'- gCUCC-GCCGGCAGaAGGUGuGGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 143741 | 0.7 | 0.701292 |
Target: 5'- gGAGGCGGCCGcggcgucggCUUCCAgGuCCG-CGa -3' miRNA: 3'- gCUCCGCCGGCa--------GAAGGUgU-GGCuGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 165982 | 0.7 | 0.701292 |
Target: 5'- gCGGGGCGGUCGguUCUUCguCAacucucCCGACGg -3' miRNA: 3'- -GCUCCGCCGGC--AGAAGguGU------GGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 118591 | 0.7 | 0.701292 |
Target: 5'- gCGAucGGCGGCCcUCUccCCGCggcgGCCGACAu -3' miRNA: 3'- -GCU--CCGCCGGcAGAa-GGUG----UGGCUGU- -5' |
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8985 | 3' | -58.5 | NC_002512.2 | + | 204848 | 0.7 | 0.710811 |
Target: 5'- aCGAcGGCGGUCGgucCUcguggaggUCCGCgACCGACGg -3' miRNA: 3'- -GCU-CCGCCGGCa--GA--------AGGUG-UGGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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