miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8985 3' -58.5 NC_002512.2 + 190564 1.09 0.003139
Target:  5'- cCGAGGCGGCCGUCUUCCACACCGACAa -3'
miRNA:   3'- -GCUCCGCCGGCAGAAGGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 146907 0.87 0.08432
Target:  5'- gGAGGCGGCCGacgUCUUCCGCGCCGuGCGc -3'
miRNA:   3'- gCUCCGCCGGC---AGAAGGUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 142006 0.79 0.263149
Target:  5'- gCGAuccGGCGGCCGUCUcuUCCGCggccggggGCCGGCGa -3'
miRNA:   3'- -GCU---CCGCCGGCAGA--AGGUG--------UGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 221771 0.78 0.280871
Target:  5'- -uGGGCGGCCGUCgugUCCuggcgccugcucuACGCCGGCGa -3'
miRNA:   3'- gcUCCGCCGGCAGa--AGG-------------UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 89360 0.77 0.342588
Target:  5'- uCGAGGCGGCCGUCc-UgGCGCCGuACGu -3'
miRNA:   3'- -GCUCCGCCGGCAGaaGgUGUGGC-UGU- -5'
8985 3' -58.5 NC_002512.2 + 148518 0.76 0.380445
Target:  5'- gGAGGCGGCCGcCgcCCGCcCCGGCc -3'
miRNA:   3'- gCUCCGCCGGCaGaaGGUGuGGCUGu -5'
8985 3' -58.5 NC_002512.2 + 211250 0.76 0.396351
Target:  5'- uCGAGGCGGCCGUCgacgCCAuguUCGACc -3'
miRNA:   3'- -GCUCCGCCGGCAGaa--GGUgu-GGCUGu -5'
8985 3' -58.5 NC_002512.2 + 101607 0.75 0.412679
Target:  5'- -cGGGCGGCCGUCggCCcgGCGCCGGg- -3'
miRNA:   3'- gcUCCGCCGGCAGaaGG--UGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 222219 0.75 0.412679
Target:  5'- uCGGGGUGGCCGUCggggCCGCguccuucgucGCCGugGc -3'
miRNA:   3'- -GCUCCGCCGGCAGaa--GGUG----------UGGCugU- -5'
8985 3' -58.5 NC_002512.2 + 137229 0.75 0.430263
Target:  5'- -cGGGCGGCCGUCccggauccgcgcgggUCCcgGCGCCGGCGg -3'
miRNA:   3'- gcUCCGCCGGCAGa--------------AGG--UGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 126973 0.75 0.446546
Target:  5'- uGGGGCccguGGCCGUCgaCCGCGCCaGGCGc -3'
miRNA:   3'- gCUCCG----CCGGCAGaaGGUGUGG-CUGU- -5'
8985 3' -58.5 NC_002512.2 + 96200 0.75 0.446546
Target:  5'- gGAGGCGGCCGcgaggUCggCCACGgCGGCc -3'
miRNA:   3'- gCUCCGCCGGC-----AGaaGGUGUgGCUGu -5'
8985 3' -58.5 NC_002512.2 + 147451 0.74 0.463166
Target:  5'- aGAcGGCGGCCGUCUgucgcugcuggucUUCGCGCgGGCGc -3'
miRNA:   3'- gCU-CCGCCGGCAGA-------------AGGUGUGgCUGU- -5'
8985 3' -58.5 NC_002512.2 + 34411 0.74 0.46405
Target:  5'- uGAuuGGCGGCCGUCUUCUgACGaCGACGa -3'
miRNA:   3'- gCU--CCGCCGGCAGAAGG-UGUgGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 6430 0.73 0.537311
Target:  5'- -aAGGCGGCCGUCUggcggGCGCCGAg- -3'
miRNA:   3'- gcUCCGCCGGCAGAagg--UGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 134133 0.73 0.546771
Target:  5'- -cAGGCGGCCGUCgcggcgcgcgUCCcgGCCGGCGg -3'
miRNA:   3'- gcUCCGCCGGCAGa---------AGGugUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 135247 0.72 0.585082
Target:  5'- uCGAGGCcGUCGUCcgcgCCGCGCuCGACGa -3'
miRNA:   3'- -GCUCCGcCGGCAGaa--GGUGUG-GCUGU- -5'
8985 3' -58.5 NC_002512.2 + 158999 0.72 0.585082
Target:  5'- gGAGGCGGCgGcCccggcgUCCGCGCCGGg- -3'
miRNA:   3'- gCUCCGCCGgCaGa-----AGGUGUGGCUgu -5'
8985 3' -58.5 NC_002512.2 + 10553 0.71 0.623881
Target:  5'- -cGGGCaGCCGgCgggCCACGCCGACGc -3'
miRNA:   3'- gcUCCGcCGGCaGaa-GGUGUGGCUGU- -5'
8985 3' -58.5 NC_002512.2 + 101913 0.71 0.623881
Target:  5'- gGGGGCGGCgUGUUcUCCAUgcggggACCGACGg -3'
miRNA:   3'- gCUCCGCCG-GCAGaAGGUG------UGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.